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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0348700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:13896299:13898120:1 gene:Os01g0348700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L23a (L25). (Os01t0348700-01)
Sequence

ATGGCTCCCAAGGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTT
GCCAAGGCAGTGAAGTCTGGGTCAATCAAGAGAAAGTCAAAGAAGATCCGCACTTCGGTG
ACATTTCACAGACCAAAGACCCTGAAGAAGGCGAGAGACCCTAAGTACCCAAGAGTCAGT
GCACCTGGCAGGAACAAGCTTGATCAGTACCAAATCCTCAAGTACCCCCTTACGACCGAA
TCTGCCATGAAGAAGATTGAAGACAACAACACCCTTGTCTTCATCGTCGACCTCAAGGCA
GACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTT
AACACTCTGATCAGGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTAT
GATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAA

Peptide Sequence

PEP ID

Os01t0348700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:13896299:13898120:1 gene:Os01g0348700 transcript:Os01t0348700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L23a (L25). (Os01t0348700-01)
Sequence

MAPKAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVS
APGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKV
NTLIRPDGKKKAYVKLTPDYDALDVANKIGII

Transcript Sequence

Transcript ID

Os01t0348700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:13896299:13898120:1 gene:Os01g0348700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L23a (L25). (Os01t0348700-01)
Sequence

CTACTACGAATCGCCAGCCGCCACACCGAGCTCCGCCGCCGCCAACCCCACCGCGGCGAG
CTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGGCCGCTGTAAAGAAGGCTGATGGAAAG
ACTCAACAAGCCTTGAAGGTTGCCAAGGCAGTGAAGTCTGGGTCAATCAAGAGAAAGTCA
AAGAAGATCCGCACTTCGGTGACATTTCACAGACCAAAGACCCTGAAGAAGGCGAGAGAC
CCTAAGTACCCAAGAGTCAGTGCACCTGGCAGGAACAAGCTTGATCAGTACCAAATCCTC
AAGTACCCCCTTACGACCGAATCTGCCATGAAGAAGATTGAAGACAACAACACCCTTGTC
TTCATCGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTAT
GACATCCAGGCAAAGAAAGTTAACACTCTGATCAGGCCTGACGGCAAGAAGAAGGCTTAC
GTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAA
GTTAGGGCGCTTTTTTTCATCATGTTGAACGTAAGATTTTGGTTGGCTAGTTCTTAATGT
TGAACAGAACCTTATAACTTGCAAAAGAACATCTTGAGTTTTGTTGAGCGAATATCATCT
GTGTGAGCGCACATTTACTGAATC