Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0343200-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:13560832:13566870:1 gene:Os01g0343200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Importin alpha-1b subunit. (Os01t0343200-01);AT-IMP (Arabidopsis thaliana importin alpha); protein transporter. (Os01t0343200-02)
Sequence	ATGTCGCTCCGGCCGAGCGAGCGGATGGGGATCCGCCAGAAGGGCTACAAGGCGTCGATG GACGCGGCGGAGGGGCGGCGGCGGCGGGAGGACATCACCGTGATACTCCGCAAGGCCGAC CGCGATCGCGCCCTCAAGGAGAAGAGGCGGCGCCCCACGGCCACCGCCGCCGCCGAGGGG TTGCCGCAGGCGGCGCACTCGTCGGCCATCGAGAAGAAGTTGGAGAGCCTGCCGATGATG GTGCAGGGGTTGTACTCGGATGACAGCAGCATGCAGTTGGAGTCGACCACGCAGTTCAGG AAGCTGCTCTCTGTCGACCATTGTCCTCCAATTGATGAGGTGATTAGATCTGGAGTGCTC CCTCGCTTTGTGGAATTCCTCACCAGGGAGGAGTACCCCCAGCTCCAGTTTGAGGCAGCA TGGGCTCTCACCAATATTGCTTCAGGAACAGCAGCCAACACAATGGCAGTTATTGAACAT GGTGCTGTGCCCATCTTTGTGAAGCTCCTCAGCTCACCAAGAGAGGATGTCCGTGAACAG GCTGTCTGGGCCCTGGGAAATGTGGCTGGGGATTCCACAAAATGCCGTAACCTGGTTCTT ATGCATGGTGCAATGTTACCGCTACTGCAGCAGCTCAATGAGCATGCTAAACTCTCGATG CTGAGGAACAGTGCCTGGACCCTTTCTAACTTCTGCCGTGGCAAGCCGCAGCCTGACTTC AAGCATGTTGAACCTGCGCTTCCAGTGCTGCGGGAGCTCATCCTCTCTCAAGATGAGGAG ATCCTAACGGACTCATGTTGGGCACTCTCTTACCTGTCAGATGGTTCTAATGACAATATA CAAGCTGTGATTGAAACTGGCGTGTGTGATTGGCTTGTTGAGCTCCTTAGCCATCCTTCA CCTGTGGTGCTCATTCCTGCTCTCCGCACGGTTGGCAACATTGTAACTGGGGATGATGCG CAGACCCAGTGTATTGTTGGTCATCCCCAAGCACTTCCCTGTCTTTTCAATCTTTTGACA ACAACTCAAAAGAAAAGCGTCAAGAGAGAAGCTTGCTGGACAATCTCCAACATCACAGCT GGAACTAAAGAGCAGATTCAGGCTGTGATCGATTCAAACATAATTGCTCCTCTATTGCAT CTGTTGCAACATGCTGAGTTTGATGTCAAAAAGGAGGCTGTTTGGGCAATTTCTAATGCC ACATCTGGTGGGACATTCAATCAGATAGAGTATCTTGTTAGTCAGGGTTGCATCAAGCCG CTTTGTGATTTACTTGTTCACCAAGATTCCAAAACAGTGTTAACTTGTTTGGAGGCCCTT GATAATATCTTGAGGGTTGGGGAGGCTAAGAAGAACTTGGGGGCTTGTAATATGAACATA TTTGTGCCGATGGTTGATGAAGCTGATGGCTTGGACAAAATTGAGGATCTCCAGAACCAT GACAATGTTGAGATATATAATAAGGCAGTTTATGTGCTTGAGTCATACTGGGTGCAGGAG GATGACCAACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATG TTTCAGTTTGGCAGTTTCGGTAAAGGTAAATTTCTATTCACTAATGGTTGGAACTGTGAA TCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGGAT GGAAATGCACCGTAG

Peptide Sequence

PEP ID	Os01t0343200-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:13560832:13566870:1 gene:Os01g0343200 transcript:Os01t0343200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Importin alpha-1b subunit. (Os01t0343200-01);AT-IMP (Arabidopsis thaliana importin alpha); protein transporter. (Os01t0343200-02)
Sequence	MSLRPSERMGIRQKGYKASMDAAEGRRRREDITVILRKADRDRALKEKRRRPTATAAAEG LPQAAHSSAIEKKLESLPMMVQGLYSDDSSMQLESTTQFRKLLSVDHCPPIDEVIRSGVL PRFVEFLTREEYPQLQFEAAWALTNIASGTAANTMAVIEHGAVPIFVKLLSSPREDVREQ AVWALGNVAGDSTKCRNLVLMHGAMLPLLQQLNEHAKLSMLRNSAWTLSNFCRGKPQPDF KHVEPALPVLRELILSQDEEILTDSCWALSYLSDGSNDNIQAVIETGVCDWLVELLSHPS PVVLIPALRTVGNIVTGDDAQTQCIVGHPQALPCLFNLLTTTQKKSVKREACWTISNITA GTKEQIQAVIDSNIIAPLLHLLQHAEFDVKKEAVWAISNATSGGTFNQIEYLVSQGCIKP LCDLLVHQDSKTVLTCLEALDNILRVGEAKKNLGACNMNIFVPMVDEADGLDKIEDLQNH DNVEIYNKAVYVLESYWVQEDDQQPFLIPSVSESESDNEMFQFGSFGKGKFLFTNGWNCE SESDNEMFQFGSFGEVPDLDGNAP

Transcript Sequence

Transcript ID	Os01t0343200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:13560832:13566870:1 gene:Os01g0343200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Importin alpha-1b subunit. (Os01t0343200-01);AT-IMP (Arabidopsis thaliana importin alpha); protein transporter. (Os01t0343200-02)
Sequence	CCTCTCCCCTGTTTCGAAGCCCCCCCCACAACACGGGAACCCCGAATCTCCCCACCTCTC CCCTCCCATTCGACTAGGGTTTTTCTCTAGGGCTTGGGGAACCTCGGCGAGGCGCGTCGG CGATGTCGCTCCGGCCGAGCGAGCGGATGGGGATCCGCCAGAAGGGCTACAAGGCGTCGA TGGACGCGGCGGAGGGGCGGCGGCGGCGGGAGGACATCACCGTGATACTCCGCAAGGCCG ACCGCGATCGCGCCCTCAAGGAGAAGAGGCGGCGCCCCACGGCCACCGCCGCCGCCGAGG GGTTGCCGCAGGCGGCGCACTCGTCGGCCATCGAGAAGAAGTTGGAGAGCCTGCCGATGA TGGTGCAGGGGTTGTACTCGGATGACAGCAGCATGCAGTTGGAGTCGACCACGCAGTTCA GGAAGCTGCTCTCTGTCGACCATTGTCCTCCAATTGATGAGGTGATTAGATCTGGAGTGC TCCCTCGCTTTGTGGAATTCCTCACCAGGGAGGAGTACCCCCAGCTCCAGTTTGAGGCAG CATGGGCTCTCACCAATATTGCTTCAGGAACAGCAGCCAACACAATGGCAGTTATTGAAC ATGGTGCTGTGCCCATCTTTGTGAAGCTCCTCAGCTCACCAAGAGAGGATGTCCGTGAAC AGGCTGTCTGGGCCCTGGGAAATGTGGCTGGGGATTCCACAAAATGCCGTAACCTGGTTC TTATGCATGGTGCAATGTTACCGCTACTGCAGCAGCTCAATGAGCATGCTAAACTCTCGA TGCTGAGGAACAGTGCCTGGACCCTTTCTAACTTCTGCCGTGGCAAGCCGCAGCCTGACT TCAAGCATGTTGAACCTGCGCTTCCAGTGCTGCGGGAGCTCATCCTCTCTCAAGATGAGG AGATCCTAACGGACTCATGTTGGGCACTCTCTTACCTGTCAGATGGTTCTAATGACAATA TACAAGCTGTGATTGAAACTGGCGTGTGTGATTGGCTTGTTGAGCTCCTTAGCCATCCTT CACCTGTGGTGCTCATTCCTGCTCTCCGCACGGTTGGCAACATTGTAACTGGGGATGATG CGCAGACCCAGTGTATTGTTGGTCATCCCCAAGCACTTCCCTGTCTTTTCAATCTTTTGA CAACAACTCAAAAGAAAAGCGTCAAGAGAGAAGCTTGCTGGACAATCTCCAACATCACAG CTGGAACTAAAGAGCAGATTCAGGCTGTGATCGATTCAAACATAATTGCTCCTCTATTGC ATCTGTTGCAACATGCTGAGTTTGATGTCAAAAAGGAGGCTGTTTGGGCAATTTCTAATG CCACATCTGGTGGGACATTCAATCAGATAGAGTATCTTGTTAGTCAGGGTTGCATCAAGC CGCTTTGTGATTTACTTGTTCACCAAGATTCCAAAACAGTGTTAACTTGTTTGGAGGCCC TTGATAATATCTTGAGGGTTGGGGAGGCTAAGAAGAACTTGGGGGCTTGTAATATGAACA TATTTGTGCCGATGGTTGATGAAGCTGATGGCTTGGACAAAATTGAGGATCTCCAGAACC ATGACAATGTTGAGATATATAATAAGGCAGTTTATGTGCTTGAGTCATACTGGGTGCAGG AGGATGACCAACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAA TGTTTCAGTTTGGCAGTTTCGGTAAAGGTAAATTTCTATTCACTAATGGTTGGAACTGTG AATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGG ATGGAAATGCACCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATCGGAGAGTCAAGTTAT CCGAGTCATGGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATA AGAGCAAGGTCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGT GTATAGCGGTTGGTTCATATGGATTATGGTTCTCCACACAAGGGGGTGGGTACTGGAAAT TGGTCGGTCGGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACC TTCCTTTCAGTAGCGTAAGCTGGTATGTCTGTGGAGGTAAAAAAAAAAGGGAAAAGACAA AAATACTTGGAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCAGTGG GTTTTG