Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0341200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:13437009:13438567:-1 gene:Os01g0341200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tubulin, conserved site domain containing protein. (Os01t0341200-01)
Sequence

ATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACC
GACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGA
CTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTC
CAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGGGCTCGGGACCGTGGCGCACCTG
CTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATA
CAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTG
CCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTC
CAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCACGCTCGCCGGCGCCGCTCACGAC
CTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGCCGACGCCGCC
GCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCTCTACGCCAGC
CTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGAGTCGCTCTGG
CGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGATCGCCGCCGTC
CTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGCCGCGGCGGTG
ATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCTCGCCGCCGCC
GTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCTCTTATTCGTC
GCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGC
TACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATG
GACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCC
GCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTGGGCGTGCGCG
GCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAA
CCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGT
TCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTCCATAGTAGAC
CCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCTGCGTATACAT
GTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAA

Peptide Sequence

PEP ID

Os01t0341200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:13437009:13438567:-1 gene:Os01g0341200 transcript:Os01t0341200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tubulin, conserved site domain containing protein. (Os01t0341200-01)
Sequence

MVALADSAAARKLLLHGAATDAAAVGMSFGLDGLWQLIAGLFSGLVHLLLLPFQAIAHGF
QALGHAIQALFAGLGTVAHLLVQAAVAGIGHGFDGMWHAIQGFFASIVAALAGAAHGLVL
PFEAFWRWLQTAAGGTGSGFQGLWQNVLAFFATLAGAAHDLVHPFEAFWKWLRTAAADAA
ADISFRLDGLWPLVKRLYASLLATLASAAHGLVPLLESLWRGLRAAAAAALPYVLVIAAV
LCVVALVWLAWPFLFPAAAVIGLALVGVAGCCAFLLLAAAVLIGRALVYAVCFGVVLLFV
AAKVVGKVLDRVLPACARCCYDDRVTTTATTMSAPDAAGMDISRAAYESLPELYAQILRS
AGPVVAAAVFCSHPVAWACAAPVAALFLFRALDKRLPPSEPCVLPAAAYPDTVTDVSDSR
SIGQHVSEDDDMSDSCSIVDPYHGEHVILTIRQRIHLRIHVVNNVCPVCALA

Transcript Sequence

Transcript ID

Os01t0341200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:13437009:13438567:-1 gene:Os01g0341200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tubulin, conserved site domain containing protein. (Os01t0341200-01)
Sequence

ACTTCTCCAGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGA
GGAAGGAGAAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAG
CTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGAC
GGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCG
TTCCAGGCCATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCT
GGGCTCGGGACCGTGGCGCACCTGCTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGA
TTCGACGGCATGTGGCATGCCATACAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCC
GGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCG
GCGGGCGGCACCGGCTCTGGTTTCCAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCC
ACGCTCGCCGGCGCCGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTC
AGGACCGCGGCCGCCGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCC
CTCGTCAAGCGCCTCTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTC
GTCCCGCTCCTCGAGTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCC
TACGTGCTAGTGATCGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCG
TTCCTGTTCCCCGCCGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGC
GCGTTCTTACTGCTCGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGC
TTCGGCGTTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTC
CTCCCCGCCTGCGCGCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATG
AGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAG
CTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCG
CATCCCGTCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTG
GATAAACGCCTCCCTCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACT
GTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATG
TCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGC
CAGAGGATTCACCTGCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCT
TAACGATGGTTAATGTAAACCGGTGCTATCGATCAGGTGATCAATGTTGGTTTGTTGGC