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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0338100-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:13291658:13294473:1 gene:Os01g0338100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription initiation factor IID, 18kD subunit family protein. (Os01t0338100-00)
Sequence

ATGCAGAACCCTGGCGGCCACCACGCTAGCCCGGCCTCGGCGGCCAAGTCCAAGTCCTCG
ACCGCTGCCGCCGCGTCGGCGTCGGGCCAGGGGAGCTCCCACCACCACCACCACCACCAC
TCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCCGACGCGTCCGCCACCACCCTCAAGCGC
AAGCGCGGCGTCTTCCAGAAAGACCTGCAGCACATGATGTACGGATTTGGGGATGATCCA
AATCCGCTTCCAGAAACTGTTGCACTTGTGGAGGACATTGTTGTAGAATATGTCACTGAC
CTGGTCCACAAGGCCCAGAACGTTGCATCAAAGAGGGGCAAGCTCTTGACAGAAGATTTT
CTTTACCTCATTCGCAAGGATGTGCGGAAACTGCACCGTGCCACTGAGCTACTCTCCATG
AATGAAGAGCTCAAGCAGGCAAGAAAAGCTTTTGATGTGAATGAAGAGACATTGGCAACA
AATAACGAGTGA

Peptide Sequence

PEP ID

Os01t0338100-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:13291658:13294473:1 gene:Os01g0338100 transcript:Os01t0338100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription initiation factor IID, 18kD subunit family protein. (Os01t0338100-00)
Sequence

MQNPGGHHASPASAAKSKSSTAAAASASGQGSSHHHHHHHSGGGGGGGGGADASATTLKR
KRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLVHKAQNVASKRGKLLTEDF
LYLIRKDVRKLHRATELLSMNEELKQARKAFDVNEETLATNNE

Transcript Sequence

Transcript ID

Os01t0338100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:13291658:13294473:1 gene:Os01g0338100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription initiation factor IID, 18kD subunit family protein. (Os01t0338100-00)
Sequence

ATGCAGAACCCTGGCGGCCACCACGCTAGCCCGGCCTCGGCGGCCAAGTCCAAGTCCTCG
ACCGCTGCCGCCGCGTCGGCGTCGGGCCAGGGGAGCTCCCACCACCACCACCACCACCAC
TCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCCGACGCGTCCGCCACCACCCTCAAGCGC
AAGCGCGGCGTCTTCCAGAAAGACCTGCAGCACATGATGTACGGATTTGGGGATGATCCA
AATCCGCTTCCAGAAACTGTTGCACTTGTGGAGGACATTGTTGTAGAATATGTCACTGAC
CTGGTCCACAAGGCCCAGAACGTTGCATCAAAGAGGGGCAAGCTCTTGACAGAAGATTTT
CTTTACCTCATTCGCAAGGATGTGCGGAAACTGCACCGTGCCACTGAGCTACTCTCCATG
AATGAAGAGCTCAAGCAGGCAAGAAAAGCTTTTGATGTGAATGAAGAGACATTGGCAACA
AATAACGAGTGATTTCTC