Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0337900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:13272614:13282008:1 gene:Os01g0337900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Dihydrolipoamide dehydrogenase. (Os01t0337900-01)
Sequence

ATGTACTCCACGGCTATCTCGCTCTCCGCCGCCGCCACCGCCGCCGCGGCGGTCGGCGGC
GCCCGGCCAGGCGCGATCCGGCCGGCGGAGCTCCGCTTCTGCGGCCTCCGCCGCGAGGCC
CTCGGGCTCCGCTCGCTGCGGGCCCCGCCGCGAGCGGCCGCCACGCCGCGGAAGGCGGCG
GCGGCTACTGGGAATGGTGCGGCCGGGAGCGGCGGGTTCGACTACGACCTCGTGATCATT
GGGGCGGGCGTCGGCGGGCACGGCGCAGCTCTCCACGCCGTCGAGAAGGGTCTGAAAACT
GCCATAATTGAGGGGGATGTTGTAGGTGGGACTTGTGTGAACAGAGGTTGTGTTCCGTCG
AAGGCACTTCTTGCTGTCAGCGGTCGGATGAGGGAACTTCAAGATGAACACCACATGAAA
TCGTTGGGTCTACAGGTTTCAACAGCTGGATATGATAGGCAGGCTGTTGCAGATCATGCA
AATAATCTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGGTGTG
GATATATTGACTGGTTTTGGCACCATTGTGGGAAAACAAAAAGTGAGATATGGAAAAGTT
GGTTTTCCTGACAATGAAATCACTGCCAGAAATATCATTATTGCAACGGGGTCTGTTCCT
TTTGTCCCCAATGGCATCGAAATAGATGGTAAAACCGTATTTACTAGTGATCATGCACTA
AAACTTGAGTCAGTTCCTGACTGGATTGCTATCGTGGGAAGCGGTTACATTGGACTGGAA
TTCAGTGATGTATACACGGCTCTGGGAAGTGAGGTTACTTTTGTTGAAGCACTTGATCAG
TTGATGCCTGGTTTTGATCCTGAGATTGCAAAATTGGCCCAAAGGATTCTTATCAATCCT
CGTAAAATTGACTATCATACTGGGGTCTTTGCGAGCAAGATTACCCCAGCAAAGGATGGT
AAACCCGTGTTGATTGAGTTAATTGATGCTAAGACAAAGGAACACAAGGAAACACTTGAG
GTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAA
AATGTCAACGTTGTTACACAACGCGGTTTTGTTCCTGTTGATGAGCGGATGCAAGTTATG
GACGCAGATGGCAATGCGGTTCCAAATTTGTATTGTATTGGAGATGCCAATGGCAAACTC
ATGCTGGCTCATGCTGCCAGTGCACAAGGAATCTCAGTTGTTGAGCGAATCTCTGGGAAA
GACAACATCCTAAATCATCTAAGCATCCCGGCTGCCTGTTTCACTCATCCGGAGATTAGT
ATGGTTGGGCTAACAGAGCCACAAGCGAGAGAAAAGGCTGATAAGGAAGGATTTGAGATA
AGTGTTGTTAAGACCAGCTTCAAGGCAAACACGAAGGCTCTGGCTGAGAATGAAGGAGAT
GGACTTGCTAAGATGATTTACCGGCCTGACACTGGAGAAATTCTTGGAGTTCACATATTA
GGTTTGCATGCTGCTGACCTCATCCACGAGGCATCAAACGCCATTGCCCTCGGAACTCGT
GTACAAGACATCAAGTTTGCTGTTCATGCACACCCAACTTTGTCTGAGGTTCTGGATGAG
CTCTTCAAAGCTGCCAAGGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCA
GCCTAG

Peptide Sequence

PEP ID

Os01t0337900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:13272614:13282008:1 gene:Os01g0337900 transcript:Os01t0337900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Dihydrolipoamide dehydrogenase. (Os01t0337900-01)
Sequence

MYSTAISLSAAATAAAAVGGARPGAIRPAELRFCGLRREALGLRSLRAPPRAAATPRKAA
AATGNGAAGSGGFDYDLVIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPS
KALLAVSGRMRELQDEHHMKSLGLQVSTAGYDRQAVADHANNLASKIRSNLTNSMKALGV
DILTGFGTIVGKQKVRYGKVGFPDNEITARNIIIATGSVPFVPNGIEIDGKTVFTSDHAL
KLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEIAKLAQRILINP
RKIDYHTGVFASKITPAKDGKPVLIELIDAKTKEHKETLEVDAALIATGRAPFTKGLGLE
NVNVVTQRGFVPVDERMQVMDADGNAVPNLYCIGDANGKLMLAHAASAQGISVVERISGK
DNILNHLSIPAACFTHPEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGD
GLAKMIYRPDTGEILGVHILGLHAADLIHEASNAIALGTRVQDIKFAVHAHPTLSEVLDE
LFKAAKVNAGVPHSVNEPVAA

Transcript Sequence

Transcript ID

Os01t0337900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:13272614:13282008:1 gene:Os01g0337900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Dihydrolipoamide dehydrogenase. (Os01t0337900-01)
Sequence

ACTCTCCCTCGGCAACTTCGAATCCTCCGCCCCGTCGTCTCCAAAACCCAACACCCACAC
GCCCTCAACGCCTCCTCCTCCGCCTCCCTCCCCTCAACCCTCAACTTGACCCCGCCTAGC
AACTGCCACCCTGTACACCACCAGCGTCGCCCCCCACGCGCTCACCTCGCCGCCATGTAC
TCCACGGCTATCTCGCTCTCCGCCGCCGCCACCGCCGCCGCGGCGGTCGGCGGCGCCCGG
CCAGGCGCGATCCGGCCGGCGGAGCTCCGCTTCTGCGGCCTCCGCCGCGAGGCCCTCGGG
CTCCGCTCGCTGCGGGCCCCGCCGCGAGCGGCCGCCACGCCGCGGAAGGCGGCGGCGGCT
ACTGGGAATGGTGCGGCCGGGAGCGGCGGGTTCGACTACGACCTCGTGATCATTGGGGCG
GGCGTCGGCGGGCACGGCGCAGCTCTCCACGCCGTCGAGAAGGGTCTGAAAACTGCCATA
ATTGAGGGGGATGTTGTAGGTGGGACTTGTGTGAACAGAGGTTGTGTTCCGTCGAAGGCA
CTTCTTGCTGTCAGCGGTCGGATGAGGGAACTTCAAGATGAACACCACATGAAATCGTTG
GGTCTACAGGTTTCAACAGCTGGATATGATAGGCAGGCTGTTGCAGATCATGCAAATAAT
CTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGGTGTGGATATA
TTGACTGGTTTTGGCACCATTGTGGGAAAACAAAAAGTGAGATATGGAAAAGTTGGTTTT
CCTGACAATGAAATCACTGCCAGAAATATCATTATTGCAACGGGGTCTGTTCCTTTTGTC
CCCAATGGCATCGAAATAGATGGTAAAACCGTATTTACTAGTGATCATGCACTAAAACTT
GAGTCAGTTCCTGACTGGATTGCTATCGTGGGAAGCGGTTACATTGGACTGGAATTCAGT
GATGTATACACGGCTCTGGGAAGTGAGGTTACTTTTGTTGAAGCACTTGATCAGTTGATG
CCTGGTTTTGATCCTGAGATTGCAAAATTGGCCCAAAGGATTCTTATCAATCCTCGTAAA
ATTGACTATCATACTGGGGTCTTTGCGAGCAAGATTACCCCAGCAAAGGATGGTAAACCC
GTGTTGATTGAGTTAATTGATGCTAAGACAAAGGAACACAAGGAAACACTTGAGGTGGAT
GCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAATGTC
AACGTTGTTACACAACGCGGTTTTGTTCCTGTTGATGAGCGGATGCAAGTTATGGACGCA
GATGGCAATGCGGTTCCAAATTTGTATTGTATTGGAGATGCCAATGGCAAACTCATGCTG
GCTCATGCTGCCAGTGCACAAGGAATCTCAGTTGTTGAGCGAATCTCTGGGAAAGACAAC
ATCCTAAATCATCTAAGCATCCCGGCTGCCTGTTTCACTCATCCGGAGATTAGTATGGTT
GGGCTAACAGAGCCACAAGCGAGAGAAAAGGCTGATAAGGAAGGATTTGAGATAAGTGTT
GTTAAGACCAGCTTCAAGGCAAACACGAAGGCTCTGGCTGAGAATGAAGGAGATGGACTT
GCTAAGATGATTTACCGGCCTGACACTGGAGAAATTCTTGGAGTTCACATATTAGGTTTG
CATGCTGCTGACCTCATCCACGAGGCATCAAACGCCATTGCCCTCGGAACTCGTGTACAA
GACATCAAGTTTGCTGTTCATGCACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTC
AAAGCTGCCAAGGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAG
AGAGGAACATCATCTGGGATAGCCCCCCTCTTGGATGTCCTTGATTCCTAGTTACTGGCA
AGTGTAATTCGGTAATTCCTGATGAGATCCACCAGTTAGTGCTGAGATATCTAATTACTG
CGGAAAAAGAGAGGAACTACTGATGAGATCCACCAGTTAGTGCTGAGATATCTAGTTACC
GCGGAAAAGAGAGGAACTACTGCGTCGTTCTATGTATGATGTATCACATATACATAACAG
TTTTGCAGCTTATGTAGAGTTCATCCGTACAGTGCTTTC