Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0329300-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:12701744:12704532:1 gene:Os01g0329300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold domain containing protein. (Os01t0329300-01)
Sequence	ATGGGGCCAACGGCGAGCGCGGCTGCACGCCGGAGCACGCGGCAACCGTCGACGATGACG ACGACAATGTCGCGTCGCACGGCGGCGGCGGTGGCCGTGTCCGTGGTGCTCCTCCTCCTC TCGTCGTGTCTCCCTTGTTGCTCGGAGGCAAGGCTGCACTACCACCGGAGGCAGCACCGG AGGGCGCCGCACCGCGGGCACCACCGCGCGGCGGCGGCGGCGGCGGCGGCGACGAACGGC GGCAGCCACATCTCTCAGCCGCCCGCCGCGCTGCCTCCCGACTTCGACAGCGGGGAATCG CCGGCGGAGACGCCGGGCTTGCCTCCGGCTGGCGTCGAGGACGCTCCGCCGCGGCGATCT CCGCGTGAGAAGCCGTGCCCGACGATGCAGCCTCCCGTCAAGCCGCCGGAGGAGTTGTCG CCGGTGGGCGCGCCGAGGTCGCGCGTTCGGGCCATGCCACCGTCACCCTCGCTGTCGCCG CCGGCCAAGGCGCCGTCACATTCTCACGCTAAGACGCCGTCGATGCCGCCGGCGGAGCGG CCGGCGCTTCCTCCCACCAAGGCGCCGGCGGCGATCTCGCCGGCCACGCCACCTCAACTC TCCCCAGCGAACGCACATTCGACGCACCATCACGCGAAGCCACCGTCATTGCCTCCGGCC GAGCCACCAGTGCCCTCGCCGTCGCCGGAGCATCCACCGCGGCACTCCCCGTCAAAGCCA CCGGCGTACGCTCCGGCCAAGCCACCGACAGCACTACGTCCGGCGATCCCTCCGGCCGCA ATGCCAAAGCCACCGTCAGTCGCTCCGGTGCAGCCACCGCAGCGGCCGCCTGCCCCGGCA ACAAAGCCACCGCCGTCGTTTCCACCGCAGCTCGCCCCGACGATGCCACCACCGGCGCAC GCGCCGGCGGAGACACCAGCACCACCAACAACGCCACCGGCGCTGCCACCGGCCACGACG GCGCCATCACCGAAGAACAGCTCATCATCACCACCTCCACCCTGCACCGGCGGCGGCGGC GGCATCAGCAACGTGTTCGACGTGAGGGCGTTCGGCGCGACGGGCAACGGCTCGAGCGCC GACGGCGACACGCGCGCGTTCCGCGCGGCGTGGAAGGCGGCGTGCTCGGCGGAGTCCGCC ACCGTGCTCGTGCCGTCCGACGGCGTGTTCACCATCACCTCCACCATCTTCGCCGGGCCA TGCAAGCCAGGCCTCACCTTCCAAATCGACGGCGTGCTGATGCCGCCGGACGGGCCGGCG AGCTGGCCGGCGGCGGACGGCCGGCGGCAGTGGATCGTCTTCTACAGGGCCGACGGGATG ACGCTGTCCGGCAAGGGCACCATCGAAGGCAACGGCGAGGAGTGGTGGAATCTCCCGTGT AAACCTCACAGGGGCCCCAATGGATCGACCCTACCCGGCCCATGTGAGAGCCCTGCACTG ATCAAGTTCGTGGCGAGCAGCGACGTGAGCGTGCAGGGCCTGAGGATGGAGAACAGCCCG CAGTTCCACCTCAAGTTCGACGGGTGCAGCCGGGTGCTGGTCGACGGCCTCGTCGTCAGC TCGCCGGCGTCGAGCCCGAACACCGACGGCGTCCACGTCGAGAACACGAGCTCCGTCCGG ATCCTCAACTCCAGGATCAGCAACGGCGACGACTGCGTCAGCATCGGCGGCGGCTGCTCG GGGGTGCGCGTCGAGAACGTCACGTGCGTGCACGGCCACGGCATCAGCATCGGCGGCCTG GGCGCGCGCGGCGCGCGGGCGTGCGTGTCGAACGTGACCGTGCGCGGCGCGCGCGTCGTC GACTCCGACAACGGCGTGCGGATCAAGACGTGGCAGGGCGGCGCCGGGTCGGTGTCGGGG GTGGTGTTCGACGCCGTCCAGATGGTGAACGTCAGGGGCTGCATCGTCATCGACCAGTAC TACTGCGATGCGCACGGCGGCGCCGGCGCCGGCTGCGCCAACCAGACCGCCGCCGTGCGC GTCGACGGCGTCGCGTACAGGGGGATCCGCGGCACGTACAACCCGCGCGGCGGCGGCGGC GCGCCGGTGCGCTTCGCGTGCAGCGACACCGTCGCCTGCACGGGCATCACCATGACCGAC GTCGAGCTGCTGCCGGCCGGCGGCGGCGACGAAGGCGGCGGTGCCAGCGCCGGCGCGAAG CTGGCCGACCCGTACTGCTGGAACGCGTACGGGGTGATGGAGACGCTGACGCAGCCGCCG GTGCACTGCCTGCAGGAAGGTCGCCCAGAGTCGCTGCAAGATCAGCTCGCAAGCTGCTGA

Peptide Sequence

PEP ID	Os01t0329300-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:12701744:12704532:1 gene:Os01g0329300 transcript:Os01t0329300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold domain containing protein. (Os01t0329300-01)
Sequence	MGPTASAAARRSTRQPSTMTTTMSRRTAAAVAVSVVLLLLSSCLPCCSEARLHYHRRQHR RAPHRGHHRAAAAAAAATNGGSHISQPPAALPPDFDSGESPAETPGLPPAGVEDAPPRRS PREKPCPTMQPPVKPPEELSPVGAPRSRVRAMPPSPSLSPPAKAPSHSHAKTPSMPPAER PALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSPSPEHPPRHSPSKP PAYAPAKPPTALRPAIPPAAMPKPPSVAPVQPPQRPPAPATKPPPSFPPQLAPTMPPPAH APAETPAPPTTPPALPPATTAPSPKNSSSSPPPPCTGGGGGISNVFDVRAFGATGNGSSA DGDTRAFRAAWKAACSAESATVLVPSDGVFTITSTIFAGPCKPGLTFQIDGVLMPPDGPA SWPAADGRRQWIVFYRADGMTLSGKGTIEGNGEEWWNLPCKPHRGPNGSTLPGPCESPAL IKFVASSDVSVQGLRMENSPQFHLKFDGCSRVLVDGLVVSSPASSPNTDGVHVENTSSVR ILNSRISNGDDCVSIGGGCSGVRVENVTCVHGHGISIGGLGARGARACVSNVTVRGARVV DSDNGVRIKTWQGGAGSVSGVVFDAVQMVNVRGCIVIDQYYCDAHGGAGAGCANQTAAVR VDGVAYRGIRGTYNPRGGGGAPVRFACSDTVACTGITMTDVELLPAGGGDEGGGASAGAK LADPYCWNAYGVMETLTQPPVHCLQEGRPESLQDQLASC

Transcript Sequence

Transcript ID	Os01t0329300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:12701744:12704532:1 gene:Os01g0329300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold domain containing protein. (Os01t0329300-01)
Sequence	AAGCAGCGCTAGCTCCACCCAGCTAGGCCGTACGTCGGCGATGGGGCCAACGGCGAGCGC GGCTGCACGCCGGAGCACGCGGCAACCGTCGACGATGACGACGACAATGTCGCGTCGCAC GGCGGCGGCGGTGGCCGTGTCCGTGGTGCTCCTCCTCCTCTCGTCGTGTCTCCCTTGTTG CTCGGAGGCAAGGCTGCACTACCACCGGAGGCAGCACCGGAGGGCGCCGCACCGCGGGCA CCACCGCGCGGCGGCGGCGGCGGCGGCGGCGACGAACGGCGGCAGCCACATCTCTCAGCC GCCCGCCGCGCTGCCTCCCGACTTCGACAGCGGGGAATCGCCGGCGGAGACGCCGGGCTT GCCTCCGGCTGGCGTCGAGGACGCTCCGCCGCGGCGATCTCCGCGTGAGAAGCCGTGCCC GACGATGCAGCCTCCCGTCAAGCCGCCGGAGGAGTTGTCGCCGGTGGGCGCGCCGAGGTC GCGCGTTCGGGCCATGCCACCGTCACCCTCGCTGTCGCCGCCGGCCAAGGCGCCGTCACA TTCTCACGCTAAGACGCCGTCGATGCCGCCGGCGGAGCGGCCGGCGCTTCCTCCCACCAA GGCGCCGGCGGCGATCTCGCCGGCCACGCCACCTCAACTCTCCCCAGCGAACGCACATTC GACGCACCATCACGCGAAGCCACCGTCATTGCCTCCGGCCGAGCCACCAGTGCCCTCGCC GTCGCCGGAGCATCCACCGCGGCACTCCCCGTCAAAGCCACCGGCGTACGCTCCGGCCAA GCCACCGACAGCACTACGTCCGGCGATCCCTCCGGCCGCAATGCCAAAGCCACCGTCAGT CGCTCCGGTGCAGCCACCGCAGCGGCCGCCTGCCCCGGCAACAAAGCCACCGCCGTCGTT TCCACCGCAGCTCGCCCCGACGATGCCACCACCGGCGCACGCGCCGGCGGAGACACCAGC ACCACCAACAACGCCACCGGCGCTGCCACCGGCCACGACGGCGCCATCACCGAAGAACAG CTCATCATCACCACCTCCACCCTGCACCGGCGGCGGCGGCGGCATCAGCAACGTGTTCGA CGTGAGGGCGTTCGGCGCGACGGGCAACGGCTCGAGCGCCGACGGCGACACGCGCGCGTT CCGCGCGGCGTGGAAGGCGGCGTGCTCGGCGGAGTCCGCCACCGTGCTCGTGCCGTCCGA CGGCGTGTTCACCATCACCTCCACCATCTTCGCCGGGCCATGCAAGCCAGGCCTCACCTT CCAAATCGACGGCGTGCTGATGCCGCCGGACGGGCCGGCGAGCTGGCCGGCGGCGGACGG CCGGCGGCAGTGGATCGTCTTCTACAGGGCCGACGGGATGACGCTGTCCGGCAAGGGCAC CATCGAAGGCAACGGCGAGGAGTGGTGGAATCTCCCGTGTAAACCTCACAGGGGCCCCAA TGGATCGACCCTACCCGGCCCATGTGAGAGCCCTGCACTGATCAAGTTCGTGGCGAGCAG CGACGTGAGCGTGCAGGGCCTGAGGATGGAGAACAGCCCGCAGTTCCACCTCAAGTTCGA CGGGTGCAGCCGGGTGCTGGTCGACGGCCTCGTCGTCAGCTCGCCGGCGTCGAGCCCGAA CACCGACGGCGTCCACGTCGAGAACACGAGCTCCGTCCGGATCCTCAACTCCAGGATCAG CAACGGCGACGACTGCGTCAGCATCGGCGGCGGCTGCTCGGGGGTGCGCGTCGAGAACGT CACGTGCGTGCACGGCCACGGCATCAGCATCGGCGGCCTGGGCGCGCGCGGCGCGCGGGC GTGCGTGTCGAACGTGACCGTGCGCGGCGCGCGCGTCGTCGACTCCGACAACGGCGTGCG GATCAAGACGTGGCAGGGCGGCGCCGGGTCGGTGTCGGGGGTGGTGTTCGACGCCGTCCA GATGGTGAACGTCAGGGGCTGCATCGTCATCGACCAGTACTACTGCGATGCGCACGGCGG CGCCGGCGCCGGCTGCGCCAACCAGACCGCCGCCGTGCGCGTCGACGGCGTCGCGTACAG GGGGATCCGCGGCACGTACAACCCGCGCGGCGGCGGCGGCGCGCCGGTGCGCTTCGCGTG CAGCGACACCGTCGCCTGCACGGGCATCACCATGACCGACGTCGAGCTGCTGCCGGCCGG CGGCGGCGACGAAGGCGGCGGTGCCAGCGCCGGCGCGAAGCTGGCCGACCCGTACTGCTG GAACGCGTACGGGGTGATGGAGACGCTGACGCAGCCGCCGGTGCACTGCCTGCAGGAAGG TCGCCCAGAGTCGCTGCAAGATCAGCTCGCAAGCTGCTGAGCAGTAGCAGACATGACATG CCTCTTCTTTTGACAATAGATTTCTTCTCCGCGATTCATGCTAATCTATAGATTTTCTTT CTCAACGATTAACTATAACTAACTTTTGAGTCATCCAGACTCCAGAGTTCC