Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0328600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:12650573:12654287:1 gene:Os01g0328600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cyclase/dehydrase. (Os01t0328600-01)
Sequence

ATGGCCGCAGGAGCTGCCTGCTGCTACCGCCCTGCCGCGGCGGGGAGGGCAAGCCTCGAC
GCCTTCGCCACCTCGTCGCCGTCGTTGAGGCCGAGCAGCAGCGGTGTCTTCTTTATCAGC
AGCAGCAGCAGCAGATGGTGGATGAGGAGGAGGAGAGGGGAGGGGAAGGTGAAAATCAGC
AGCAGCAGCAGGGCAAGAGCCAAGCCCATGTCGAGACCTGCGCTCTTCTCCCCTGTGGCC
ATGGAGTGGCAGGAGTGCAGCACCGAGATTGAAGTCGATGTTCCCTGTTCAGTGGCTTAT
CAGTGTTACTCAGAACGTGAGACCATTCCTCAATGGATGCCATTTATCTCATCTGTCAAG
GTGCCTGTTAAGCTTTGCTCAAAATATATTTCTTCCCATTTTTCTTCATTACCATGCTTT
GGTTGGTGGCCAGCAAACATTTTACCATTACGTTGCCATGGAAAATGA

Peptide Sequence

PEP ID

Os01t0328600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:12650573:12654287:1 gene:Os01g0328600 transcript:Os01t0328600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cyclase/dehydrase. (Os01t0328600-01)
Sequence

MAAGAACCYRPAAAGRASLDAFATSSPSLRPSSSGVFFISSSSSRWWMRRRRGEGKVKIS
SSSRARAKPMSRPALFSPVAMEWQECSTEIEVDVPCSVAYQCYSERETIPQWMPFISSVK
VPVKLCSKYISSHFSSLPCFGWWPANILPLRCHGK

Transcript Sequence

Transcript ID

Os01t0328600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:12650573:12654287:1 gene:Os01g0328600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cyclase/dehydrase. (Os01t0328600-01)
Sequence

GACTCACACGAGGGAGAGGAGAAGAAGAAGAAGAGCCGCCATGGCCGCAGGAGCTGCCTG
CTGCTACCGCCCTGCCGCGGCGGGGAGGGCAAGCCTCGACGCCTTCGCCACCTCGTCGCC
GTCGTTGAGGCCGAGCAGCAGCGGTGTCTTCTTTATCAGCAGCAGCAGCAGCAGATGGTG
GATGAGGAGGAGGAGAGGGGAGGGGAAGGTGAAAATCAGCAGCAGCAGCAGGGCAAGAGC
CAAGCCCATGTCGAGACCTGCGCTCTTCTCCCCTGTGGCCATGGAGTGGCAGGAGTGCAG
CACCGAGATTGAAGTCGATGTTCCCTGTTCAGTGGCTTATCAGTGTTACTCAGAACGTGA
GACCATTCCTCAATGGATGCCATTTATCTCATCTGTCAAGGTGCCTGTTAAGCTTTGCTC
AAAATATATTTCTTCCCATTTTTCTTCATTACCATGCTTTGGTTGGTGGCCAGCAAACAT
TTTACCATTACGTTGCCATGGAAAATGAACAATGATGCTTTCTTTCTCTGAGTTATGAGT
ACCTAAACAAGAAGGAACAATAAAACGTTAACCTAAATAAAAGGAACAATAAAACATTAG
CTTTATTTCATAAGACAAATACAAACATGATATCTTATGGTCCATTAGTTTAGTTGACCT
ATACACCATTCTGATTTCACGATGAAAAGTGAGTATCAAACAATGATAGTTGCCTATTTG
TAATTAACTGAAAAGTTTTTTTAAAGAAATAAGACCAAGAGTTTAACTGATTCAAGTAAC
CACGGAATGACACAACTTTTTATATACTCAGCAGTTTGCACAAACCCCGTTATTGGTACT
TATGCCCTTTAGGACTTGCATGCTTTTCCAATGGTAGTTGGACAGATTTCTTGCTGTCAT
CAATTCATCAATGATGATTATCGTGTTCGCTAAAAAATAAAATCAATTATGCTTATCTGA
TCAGTTGTTCTCATGGTGATATCTCTTTCAGTCCAATATCCCAAACAATAGATCCCTGTA
TAGGACATCTTTATGTTGAAAATCTGTTGCAATGGGACTTATGTTTGTTTTTACTGTATA
AGCACAATCGACAAGTTATGTAAGATGTGATGGGAAAAAAAAGATCGATAACTGACATCT
TAAAAAAGATCCTTGAAGATAAACCAGATCAATCACGTTGGACTTTGAAGTATGAGATAC
TTGGTCGAGATGTAGAATTTTCGTGGCTAGCTCGAAACATGACACCTACTAAAAACCAAA
AGATCCATTGGCGATCTCTTGAAGGTCTTCAAAATAGGGGTGCTGTTCGTTTCTTTCCTA
AAAGCTCATCCTCTTGCAGAGTACAACTGACGGTGGCTTATGAAGTTCCTGAAATTTTGG
CACCTGTTGCGTCAGCACTGAAGCCATTTCTGGAAGGGCTGCTTATGCAAGGTTTAGAAC
GTTTCGCGACGTTTGCGAAGGAACGATATAGCAAGATCCCTCAACCTTGACGGGAATCAA
TCATTTGCATTCGAATACTCATTTCTAAGGATTTTAGTCTCATTCAAGAGAAGCCCAGCG
AAGGTCACAATCGATGTAAAGACCAGTAGACCACCTAATGCCACCCTAGATGCAGTGGAA
AATTCATCCAAAGGGAATTACAAGAGTTGACTGCTATGAGAAATAAAACTGAAATAAAAG
AATCATATTGTTGACCATTCTTTTTGGTCATTATAATCAATGAAATGTACCAGCATTGAA
CA