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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0328400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:12645608:12646401:-1 gene:Os01g0328400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN 5 description:Ubiquitin. (Os01t0328400-01)
Sequence

ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG
GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG
CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAAC
ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGC
AAGAAGAAGACGTACACCAAGCCCAAGAAGCAGAAGCACAAGCACAAGAAGGTGAAGCTC
GCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCCGCCTCCGCAAG
GAGTGCCCCAACGCCGAGTGCGGCGCCGGCACCTTCATGGCCAACCACTTCGACCGCCAC
TACTGCGGTAAGTGCGGCCTCACCTACGTCTACAACCAGCAGGCTTAG

Peptide Sequence

PEP ID

Os01t0328400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:12645608:12646401:-1 gene:Os01g0328400 transcript:Os01t0328400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN 5 description:Ubiquitin. (Os01t0328400-01)
Sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDATGKVTRLRK
ECPNAECGAGTFMANHFDRHYCGKCGLTYVYNQQA

Transcript Sequence

Transcript ID

Os01t0328400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:12645608:12646401:-1 gene:Os01g0328400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN 5 description:Ubiquitin. (Os01t0328400-01)
Sequence

AGCCGTCCACACCCCACCACCACCGCCGTCGCCTCCACCCCGCCGCCGCGGGAGAAACCA
CAGGTAAGGGCAAGCGCGCCGCCGCTGCGGCCGCCGGCGAAGATGCAGATCTTCGTGAAG
ACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTG
AAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTCGCC
GGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACC
CTCCACCTGGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACC
AAGCCCAAGAAGCAGAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTAC
AAGGTGGACGACGCCACCGGCAAGGTCACCCGCCTCCGCAAGGAGTGCCCCAACGCCGAG
TGCGGCGCCGGCACCTTCATGGCCAACCACTTCGACCGCCACTACTGCGGTAAGTGCGGC
CTCACCTACGTCTACAACCAGCAGGCTTAGGCGTAGGCTCCTGTTCTTTGGGGGCGGAAG
TAAGGAAGGAGGAGGAAATCGAACTGGTTATTAGATGATAATTAATCCTTTTTTGTCATG
TCGTATTAAACTAGTCTCCTTGGAACTGAACACCTTAGCATCACCTCTGTGAAGATTGTG
ATGCCCTACTTTTGGTTTTGAAATCATGTTATGTACTACTGTCGAATTATGTTTGGGTTA
ATCATCTTTTTATC