Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0306900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:11426447:11430996:-1 gene:Os01g0306900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF789 family protein. (Os01t0306900-01)
Sequence

ATGTCCGTCCCCGGCGTCGCCTCCCGCGCCGCCGACCGCTTCTACTGCCCGCCGCCGCGC
CGCCACCTGCTCCACCACCACCACAACCAGGCGTCTAAGGCGGCGGCGGCGGCTGTAGAG
AGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGGAGGAGGAGGAGACCAATCTCGAG
TGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGCATCGGCTCCCCCGGACGAGCTCG
AGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGTACTACGAGCTCGCGGATCTGTGG
GAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCGTGCCGCTCCTGCTCAATGGCACG
GACGGCGTCGTGCAGTACTACGTCCCCTTCCTGTCGGCTATCCAGCTGTTCGCTGCCCGG
CCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATAGTGATGGTGAGAGTGCTCAGGAT
ATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCCGATGTTTAGTTAACAGTATTTCT
GCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCT
GTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATA
TCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCA
TCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTG
AAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACA
CTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATAGCAAAATTTATGATGTTCCTGGA
AAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAATGGTTCCATGTGGACA
TCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAAAGCTGCAGATGACTGG
CTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCTTTCACACTAA

Peptide Sequence

PEP ID

Os01t0306900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:11426447:11430996:-1 gene:Os01g0306900 transcript:Os01t0306900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF789 family protein. (Os01t0306900-01)
Sequence

MSVPGVASRAADRFYCPPPRRHLLHHHHNQASKAAAAAVERQPRSAAAAAKEEEEETNLE
CFIASTAVRVPAHRLPRTSSSSRERGAAGAPPYYELADLWEAFAEWSAYGAGVPLLLNGT
DGVVQYYVPFLSAIQLFAARPPSSTSGRLGEDSDGESAQDMSSESDHEHLRCRCLVNSIS
ADQDGFSSDDSESGNQELYPVFQYMEHDAPYGRQPLADMISLLANRFPDLRTYKSCDLLP
SSWISVAWYPIYRIPTGPTLKDLDACFLTFHSLSTPAEGTLSGHPETNVFHDSKIYDVPG
KVTLPLIGLASHKFNGSMWTSNQEHEQQLTKSLLKAADDWLCQRRVNHPDYRFFLSH

Transcript Sequence

Transcript ID

Os01t0306900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:11426447:11430996:-1 gene:Os01g0306900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF789 family protein. (Os01t0306900-01)
Sequence

ATAATTCGCAGGCCGTCGCTTGCTCTACCACAGCAGCCGCCGCAAACGACGCCCTCTTTT
CTCTGTCTCCCTCCCTCCTCCTGCCGCTCACATCAAAATCCTTCTCTCTCTCGCGGCGCT
CGGCTGAAGCCCAGCCATGTCCGTCCCCGGCGTCGCCTCCCGCGCCGCCGACCGCTTCTA
CTGCCCGCCGCCGCGCCGCCACCTGCTCCACCACCACCACAACCAGGCGTCTAAGGCGGC
GGCGGCGGCTGTAGAGAGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGGAGGAGGA
GGAGACCAATCTCGAGTGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGCATCGGCT
CCCCCGGACGAGCTCGAGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGTACTACGA
GCTCGCGGATCTGTGGGAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCGTGCCGCT
CCTGCTCAATGGCACGGACGGCGTCGTGCAGTACTACGTCCCCTTCCTGTCGGCTATCCA
GCTGTTCGCTGCCCGGCCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATAGTGATGG
TGAGAGTGCTCAGGATATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCCGATGTTT
AGTTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAA
CCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACC
TTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAG
CTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACC
GACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTAC
ACCAGCGGAAGGTACACTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATAGCAAAAT
TTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAA
TGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAA
AGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCT
TTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTCAGCCAGA
TGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATC
ATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCATATTTATT
TTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGAT
AGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCA
GAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATG
ATGATGATAAAGTATTTCAACATTTTGTTTT