Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0306100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:11364355:11365344:-1 gene:Os01g0306100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant specific eukaryotic initiation factor 4B family protein. (Os01t0306100-01)
Sequence

ATGAACCGAGAGAGCGGCGGCGCCATGGCGGCGAGGCGGTTCTCCTTCTCCTGGGCCGAC
GAGGTGGAGCGCGAGGAGGCGGCGGAGCAGCAGCAGCAGCAGCAGGAGGAGGACGACGAC
GAGGAGAATCAGCCGCCGCCGCCGCCTCGGCGATGCGGGGAGACAGGGGAGCAGGCGAAG
GCGAACCCGTTCGGCGCCGCGCGGCCGCGGGAGGTGGTGCTCGCCGAGAAAGGCGTCGAC
TGGCGCGCCCGCGACCGCGAGCTCGACGACGCCTCCCGCCGCGGCAGCGCCATCCGCAGC
AGGAGTCGCGTGCACGGCAGCAAGAGGCACGCTCGGGATGCGCCCGTGGCGGCGAGGCGG
CACGAGGACTCGACGCCGGCGAGCCGCCGCCGCATGATCAGCTTGCCGCCGGTCAGCTAC
GGCAGCGCATGGGGTGGTAAGAGGAAATGCGCCGGCCAGGACGAGCCGTCCCGGCAAGAC
CGGCCGGTGGCCGAACATTGCCGGAGAGTTTTCGGCCAGCTGAACATCGGCGAAGGCGGC
GAATTCTCTCGCCGGAGCTCCACCGAGAGCCGCGGCTCGGTCTGCACCGATCGAACCGAA
GCAAGCAACGCTGCAGCTGCAGAAACGGAGACCAGTGTTGGTCAGAGGAGGATGAGTAGG
AGGAGGAGCAGGAAGAACGTGAGGAAGATGGAATCAACCAAGTCCAAGAAGCAGCAAACT
CTGCAACTCTAG

Peptide Sequence

PEP ID

Os01t0306100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:11364355:11365344:-1 gene:Os01g0306100 transcript:Os01t0306100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant specific eukaryotic initiation factor 4B family protein. (Os01t0306100-01)
Sequence

MNRESGGAMAARRFSFSWADEVEREEAAEQQQQQQEEDDDEENQPPPPPRRCGETGEQAK
ANPFGAARPREVVLAEKGVDWRARDRELDDASRRGSAIRSRSRVHGSKRHARDAPVAARR
HEDSTPASRRRMISLPPVSYGSAWGGKRKCAGQDEPSRQDRPVAEHCRRVFGQLNIGEGG
EFSRRSSTESRGSVCTDRTEASNAAAAETETSVGQRRMSRRRSRKNVRKMESTKSKKQQT
LQL

Transcript Sequence

Transcript ID

Os01t0306100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:11364355:11365344:-1 gene:Os01g0306100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant specific eukaryotic initiation factor 4B family protein. (Os01t0306100-01)
Sequence

AAAGGGGAGATGAACCGAGAGAGCGGCGGCGCCATGGCGGCGAGGCGGTTCTCCTTCTCC
TGGGCCGACGAGGTGGAGCGCGAGGAGGCGGCGGAGCAGCAGCAGCAGCAGCAGGAGGAG
GACGACGACGAGGAGAATCAGCCGCCGCCGCCGCCTCGGCGATGCGGGGAGACAGGGGAG
CAGGCGAAGGCGAACCCGTTCGGCGCCGCGCGGCCGCGGGAGGTGGTGCTCGCCGAGAAA
GGCGTCGACTGGCGCGCCCGCGACCGCGAGCTCGACGACGCCTCCCGCCGCGGCAGCGCC
ATCCGCAGCAGGAGTCGCGTGCACGGCAGCAAGAGGCACGCTCGGGATGCGCCCGTGGCG
GCGAGGCGGCACGAGGACTCGACGCCGGCGAGCCGCCGCCGCATGATCAGCTTGCCGCCG
GTCAGCTACGGCAGCGCATGGGGTGGTAAGAGGAAATGCGCCGGCCAGGACGAGCCGTCC
CGGCAAGACCGGCCGGTGGCCGAACATTGCCGGAGAGTTTTCGGCCAGCTGAACATCGGC
GAAGGCGGCGAATTCTCTCGCCGGAGCTCCACCGAGAGCCGCGGCTCGGTCTGCACCGAT
CGAACCGAAGCAAGCAACGCTGCAGCTGCAGAAACGGAGACCAGTGTTGGTCAGAGGAGG
ATGAGTAGGAGGAGGAGCAGGAAGAACGTGAGGAAGATGGAATCAACCAAGTCCAAGAAG
CAGCAAACTCTGCAACTCTAGGTGGTGGCGTGAAGCTGCACGGTGATGGTCTCACCTGTT
TAGTGATTACTGATTTCTGCATCTACTGCTACTCCACTGTCCATTGATTACTGACTAGTA
CTAGACTGAACTAGCTATGGATGATTAGACGTGTACCTAATGCAGTACTAGTATAACATG
TTGCCACAAGTTTAGGCAGT