Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0302500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:11167043:11174451:1 gene:Os01g0302500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 6 description:Knotted1-type homeobox protein OSH6. (Os01t0302500-01)
Sequence

ATGGAGGATCTGTACAGCATCCACCCGGGGATCTCGCGGGTCGGCGGCGCGGCGAGCGAG
GCGTCCGGCGTGGGCGTCGTCGTCGGCGGCGGCGGCGGGTCGTCGTCGTCGGATCTGACG
GAGCTCATGAAGGCTCAGATCGCCGGTCACCCGCGCTACCCGACCCTCCTCTCCGCCTAC
ATCGAGTGTCGCAAGGTGGGAGCGCCTCCGGAGGTGGCGTCGCTGCTGAAGGAGATCGGC
CGGGAGAGGCGCGCCGGCGGCGGCGGCGGCGGCGCCGGGCAGATCGGCGTCGACCCCGAG
CTCGACGAGTTCATGGAGGCGTACTGCCGGGTGCTGGTGCGCTACAAGGAGGAGCTGTCC
CGGCCGTTCGACGAGGCGGCGTCTTTCCTCAGCAGCATCCAGACGCAGCTCAGCAACCTC
TGCAGCGGCGCCACCTCGCCGCCGGCCACCACCGCCACGCACTCCGATGAAATGGTGGGG
TCCTCCGACGAAGACCAGTGCTCGGGGGAGACTGATATGCTAGATATAGGGCAAGAGCAA
AGCTCCCGCTTAGCTGACCACGAACTCAAGGAAATGCTTCTGAAGAAGTACAGTGGCTGC
CTCAGCCGGCTCCGGTCCGAGTTCCTGAAGAAGCGGAAGAAAGGGAAGCTACCAAAGGAC
GCACGGTCGGCACTGCTTGAATGGTGGAACACACACTACCGCTGGCCATATCCCACGGAA
GAAGATAAGCTGAGGCTTGCAGCGAGGACAGGTCTTGACCCAAAGCAGATCAACAATTGG
TTCATCAACCAGAGGAAGAGGCACTGGAAGCCATCGGACGGGATGCGGTTCGCGCTCATG
GAGGGCGTGGCGGGTGGATCGTCCGGGACGACGCTCTACTTCGACACTGGCACAATTGGA
CCATGA

Peptide Sequence

PEP ID

Os01t0302500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:11167043:11174451:1 gene:Os01g0302500 transcript:Os01t0302500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 6 description:Knotted1-type homeobox protein OSH6. (Os01t0302500-01)
Sequence

MEDLYSIHPGISRVGGAASEASGVGVVVGGGGGSSSSDLTELMKAQIAGHPRYPTLLSAY
IECRKVGAPPEVASLLKEIGRERRAGGGGGGAGQIGVDPELDEFMEAYCRVLVRYKEELS
RPFDEAASFLSSIQTQLSNLCSGATSPPATTATHSDEMVGSSDEDQCSGETDMLDIGQEQ
SSRLADHELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTE
EDKLRLAARTGLDPKQINNWFINQRKRHWKPSDGMRFALMEGVAGGSSGTTLYFDTGTIG
P

Transcript Sequence

Transcript ID

Os01t0302500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:11167043:11174451:1 gene:Os01g0302500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 6 description:Knotted1-type homeobox protein OSH6. (Os01t0302500-01)
Sequence

AGCTGCTGAATTCCCCCATGAGCCTCTGCCTCCCTGCCTGCCCCCGTATGTAGCAAGAAC
AAGAACACCAGCGAGTAACACAGGCTCGCTACAGTGGTACTAGATTACCGCTTGTGCGGG
CATAGTGATCGTCTATAGTTGTGAATTGCGATGCAGCAGCATAGGTGGTGAGCTGCTGCG
GCTGCTGCTGCTGGTACGTAGATGGAGGATCTGTACAGCATCCACCCGGGGATCTCGCGG
GTCGGCGGCGCGGCGAGCGAGGCGTCCGGCGTGGGCGTCGTCGTCGGCGGCGGCGGCGGG
TCGTCGTCGTCGGATCTGACGGAGCTCATGAAGGCTCAGATCGCCGGTCACCCGCGCTAC
CCGACCCTCCTCTCCGCCTACATCGAGTGTCGCAAGGTGGGAGCGCCTCCGGAGGTGGCG
TCGCTGCTGAAGGAGATCGGCCGGGAGAGGCGCGCCGGCGGCGGCGGCGGCGGCGCCGGG
CAGATCGGCGTCGACCCCGAGCTCGACGAGTTCATGGAGGCGTACTGCCGGGTGCTGGTG
CGCTACAAGGAGGAGCTGTCCCGGCCGTTCGACGAGGCGGCGTCTTTCCTCAGCAGCATC
CAGACGCAGCTCAGCAACCTCTGCAGCGGCGCCACCTCGCCGCCGGCCACCACCGCCACG
CACTCCGATGAAATGGTGGGGTCCTCCGACGAAGACCAGTGCTCGGGGGAGACTGATATG
CTAGATATAGGGCAAGAGCAAAGCTCCCGCTTAGCTGACCACGAACTCAAGGAAATGCTT
CTGAAGAAGTACAGTGGCTGCCTCAGCCGGCTCCGGTCCGAGTTCCTGAAGAAGCGGAAG
AAAGGGAAGCTACCAAAGGACGCACGGTCGGCACTGCTTGAATGGTGGAACACACACTAC
CGCTGGCCATATCCCACGGAAGAAGATAAGCTGAGGCTTGCAGCGAGGACAGGTCTTGAC
CCAAAGCAGATCAACAATTGGTTCATCAACCAGAGGAAGAGGCACTGGAAGCCATCGGAC
GGGATGCGGTTCGCGCTCATGGAGGGCGTGGCGGGTGGATCGTCCGGGACGACGCTCTAC
TTCGACACTGGCACAATTGGACCATGAATTCATTTTTGAGCAATGCCGCCTCTTGAGAAA
ATTGGCCATTTAGGCAGTAATAGTAGGACATGGTATTTGGTGGTGATTGTGTCTAGCTAT
GATCAATCTTTCAGCAGGTCAGTGTTATTCAGTTCAGGGTAAAGTAATTGCCTCATTGTT
TTGGCAGATCATGTGTATATGGCATCGTACCAAATCAAAATGTATAATCGTTAGGTAATA
TATATCTTGGGGAGACCTGAAAAGGCTGTTATTAGTAGTTTCATGTAATGGCTCAACTCA
AGGGTTGTGAGTAATCTTTGTCCACACTGCGTACCCAGCTGGACTGTTAGATAGGCCGAG
GACTTGAAAAAGGTAAGTTTACCTGTACTAAAATGTTTGCCTATTATTTTGTCTATATTT
ATAAATTCATTTGTTCGGACTTC