Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0296200-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:10830393:10831757:1 gene:Os01g0296200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os01t0296200-00)
Sequence

TCTTTGCAGGCGATGCGGTTCGCCATCAGCAACAACGTGACGGTGCGAGGGCTCAAGGTG
CAGAACAGCCCGGAGTTCCACTTCCGGTTCGACAACTGCAACGGCGTGCGCGTCGACGGC
CTGTCCATCAGCTCGCCGGCGCTGAGCCCCAACACCGACGGCATCCACGTCGAGAACACC
TCGGACGTCCTCATCACCAACACCGTCGTCTCCAACGGCGACGACTGCGTCTCCATCGGC
GCCGGCACGCTCAACGTCCACATCGAGAACGTCACCTGCGGGCCCGGGCACGGCATCAGC
ATCGGCAGCCTGGGGAAGGCCGGGACCAAGGCGTGCGTGGCGAACGTGACGGTGCGGAAC
GCGGTGATCCGGCACTCGGACAACGGCGTGCGCATCAAGACGTGGCAGGGCGGGTCCGGC
TCCGTGTCGGCGGTGGCGTTCGAGAACGTGAGGATGGACGCGGTGCGCAACCCCATCATC
ATCGACCAGTACTACTGCCTCTCCAAGAGCTGCGAGAACGAGACCACCGCCGTGTTCGTC
AACGGCGTCTCCTACTCCGGCATCCGGGGCACCTACGACGTGCGCGGCCCGCCCATCCAC
TTCGGCTGCAGCGACGCCGTGCCGTGCACCAACATCACGCTCTCCGACGTCGAGCTGCTG
CCGGCGTCCGGCGACACCGTCGACGAGCCCTTCTGCTGGAACGTCTACGGCAACGCCGCC
ACGCCCACCGTGCCGCCGGTGTCGTGCCTCAGCTCCGGCTTCCCCAACTACACCGAGAAA
AAGGACCTCCAGTGTTACTGA

Peptide Sequence

PEP ID

Os01t0296200-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:10830393:10831757:1 gene:Os01g0296200 transcript:Os01t0296200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os01t0296200-00)
Sequence

SLQAMRFAISNNVTVRGLKVQNSPEFHFRFDNCNGVRVDGLSISSPALSPNTDGIHVENT
SDVLITNTVVSNGDDCVSIGAGTLNVHIENVTCGPGHGISIGSLGKAGTKACVANVTVRN
AVIRHSDNGVRIKTWQGGSGSVSAVAFENVRMDAVRNPIIIDQYYCLSKSCENETTAVFV
NGVSYSGIRGTYDVRGPPIHFGCSDAVPCTNITLSDVELLPASGDTVDEPFCWNVYGNAA
TPTVPPVSCLSSGFPNYTEKKDLQCY

Transcript Sequence

Transcript ID

Os01t0296200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:10830393:10831757:1 gene:Os01g0296200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os01t0296200-00)
Sequence

TTCGGCGCGGCCGGGGACGGCGTGACGGACGACACCGACGCGCTCAAGACGGCGTGGGAC
ACCGCGTGCGCGGACGACGGCGCGGGCGTCGTGCTGGCCGCCGCCGGTCGCTCGTTCCTG
ATCCACACCACCGTCTTCACCGGGCCCTGCCAGGGCAGCGTCACGCTGCAGTGACAGTGT
AATCAGTGCTAAGTACGATGCTAATCTTTGCAGGCGATGCGGTTCGCCATCAGCAACAAC
GTGACGGTGCGAGGGCTCAAGGTGCAGAACAGCCCGGAGTTCCACTTCCGGTTCGACAAC
TGCAACGGCGTGCGCGTCGACGGCCTGTCCATCAGCTCGCCGGCGCTGAGCCCCAACACC
GACGGCATCCACGTCGAGAACACCTCGGACGTCCTCATCACCAACACCGTCGTCTCCAAC
GGCGACGACTGCGTCTCCATCGGCGCCGGCACGCTCAACGTCCACATCGAGAACGTCACC
TGCGGGCCCGGGCACGGCATCAGCATCGGCAGCCTGGGGAAGGCCGGGACCAAGGCGTGC
GTGGCGAACGTGACGGTGCGGAACGCGGTGATCCGGCACTCGGACAACGGCGTGCGCATC
AAGACGTGGCAGGGCGGGTCCGGCTCCGTGTCGGCGGTGGCGTTCGAGAACGTGAGGATG
GACGCGGTGCGCAACCCCATCATCATCGACCAGTACTACTGCCTCTCCAAGAGCTGCGAG
AACGAGACCACCGCCGTGTTCGTCAACGGCGTCTCCTACTCCGGCATCCGGGGCACCTAC
GACGTGCGCGGCCCGCCCATCCACTTCGGCTGCAGCGACGCCGTGCCGTGCACCAACATC
ACGCTCTCCGACGTCGAGCTGCTGCCGGCGTCCGGCGACACCGTCGACGAGCCCTTCTGC
TGGAACGTCTACGGCAACGCCGCCACGCCCACCGTGCCGCCGGTGTCGTGCCTCAGCTCC
GGCTTCCCCAACTACACCGAGAAAAAGGACCTCCAGTGTTACTGA