Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0286100-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:10271157:10274304:-1 gene:Os01g0286100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIL15 description:Phytochrome-interacting factor-like protein, Basic helix-loop-helix factor, Repression of seedling growth in the dark (Os01t0286100-01)
Sequence	ATGTCCGACGGCAACGACTTCGCCGAGCTGCTGTGGGAGAACGGCCAGGCGGTGGTGCAC GGGAGGAAGAAGCACCCGCAGCCGGCCTTCCCGCCGTTCGGCTTCTTCGGTGGCACCGGC GGTGGCGGCGGCGGCAGCAGTAGTAGAGCCCAGGAGAGGCAGCCCGGCGGCATCGATGCG TTCGCCAAGGTGGGGGGCGGCTTCGGCGCCTTGGGCATGGCTCCGGCGGTGCACGACTTC GCTTCTGGCTTCGGCGCCACCACGCAGGACAACGGTGATGATGACACCGTTCCGTGGATC CATTACCCCATAATTGACGATGAAGACGCCGCCGCCCCTGCTGCTCTCGCAGCAGCGGAC TATGGCTCCGACTTCTTCTCCGAGCTCCAGGCGGCGGCGGCTGCCGCGGCGGCCGCCGCG CCGCCGACCGATCTCGCCTCTCTGCCAGCCTCCAATCACAACGGCGCCACCAATAACAGA AATGCTCCGGTTGCCACCACCACCACCAGGGAACCCTCCAAGGAAAGCCACGGCGGCCTG TCGGTTCCCACCACCCGAGCCGAGCCGCAGCCGCAGCCACAGCTCGCCGCAGCCAAGCTG CCTCGGTCGAGCGGCAGCGGCGGCGGCGAGGGCGTGATGAACTTCTCGCTCTTCTCCCGC CCGGCCGTCCTGGCGAGGGCGACGCTGGAGAGCGCGCAGAGGACGCAGGGCACCGACAAT AAGGCGTCCAATGTCACCGCGAGCAACCGCGTCGAGTCGACGGTCGTGCAGACGGCGAGC GGGCCAAGGAGCGCACCGGCGTTCGCCGATCAGAGGGCGGCGGCGTGGCCGCCGCAGCCG AAGGAGATGCCGTTCGCGTCCACGGCAGCCGCTCCCATGGCCCCGGCCGTTAACCTGCAC CACGAGATGGGCCGTGACAGGGCAGGCCGAACCATGCCTGTCCACAAAACCGAGGCGAGG AAGGCACCTGAGGCCACGGTCGCGACATCGTCGGTGTGCTCCGGCAACGGAGCTGGGAGT GACGAGCTGTGGCGCCAGCAGAAGCGGAAGTGCCAGGCCCAGGCAGAGTGCTCAGCTAGC CAAGACGATGATCTTGACGATGAACCTGGAGTATTGAGAAAATCTGGAACCAGGAGCACG AAACGCAGCCGCACAGCTGAGGTTCACAATTTATCAGAAAGGAGGAGAAGGGACAGGATC AATGAAAAGATGCGCGCTCTGCAAGAACTCATTCCCAACTGCAACAAGATTGATAAAGCC TCGATGCTGGATGAAGCTATAGAGTACCTCAAAACCCTTCAGCTTCAAGTACAGATGATG TCCATGGGAACTGGGCTGTGCATTCCTCCAATGCTATTACCAACAGCCATGCAGCACTTG CAAATTCCACCGATGGCTCATTTCCCTCATCTCGGCATGGGATTGGGGTACGGGATGGGC GTCTTCGACATGAGCAACACTGGAGCACTTCAGATGCCACCCATGCCTGGTGCTCACTTT CCCTGCCCAATGATCCCAGGTGCGTCACCACAAGGTCTTGGGATCCCTGGCACAAGCACC ATGCCAATGTTTGGGGTTCCTGGGCAAACAATTCCTTCGTCAGCGTCTAGTGTACCACCA TTTGCATCTTTGGCTGGTCTTCCTGTTAGGCCAAGCGGGGTCCCTCAAGTATCAGGCGCC ATGGCTAACATGGTGCAAGACCAGCAACAAGGCATAGCGAATCAACAGCAGCAATGTCTG AACAAGGAAGCTATACAGGGAGCAAATCCAGGTGATTCACAAATGCAGATCATCATGCAG GGTGACAACGAGAATTTTAGGATACCCTCTTCAGCCCAAACAAAAAGCAGTCAATTTTCA GATGGTACCGGCAAGGGGACCAACGCTAGAGAGAGAGATGGGGCTGAAACATAA

Peptide Sequence

PEP ID	Os01t0286100-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:10271157:10274304:-1 gene:Os01g0286100 transcript:Os01t0286100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIL15 description:Phytochrome-interacting factor-like protein, Basic helix-loop-helix factor, Repression of seedling growth in the dark (Os01t0286100-01)
Sequence	MSDGNDFAELLWENGQAVVHGRKKHPQPAFPPFGFFGGTGGGGGGSSSRAQERQPGGIDA FAKVGGGFGALGMAPAVHDFASGFGATTQDNGDDDTVPWIHYPIIDDEDAAAPAALAAAD YGSDFFSELQAAAAAAAAAAPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL SVPTTRAEPQPQPQLAAAKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDN KASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMPFASTAAAPMAPAVNLH HEMGRDRAGRTMPVHKTEARKAPEATVATSSVCSGNGAGSDELWRQQKRKCQAQAECSAS QDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA SMLDEAIEYLKTLQLQVQMMSMGTGLCIPPMLLPTAMQHLQIPPMAHFPHLGMGLGYGMG VFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQTIPSSASSVPP FASLAGLPVRPSGVPQVSGAMANMVQDQQQGIANQQQQCLNKEAIQGANPGDSQMQIIMQ GDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET

Transcript Sequence

Transcript ID	Os01t0286100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:10271157:10274304:-1 gene:Os01g0286100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIL15 description:Phytochrome-interacting factor-like protein, Basic helix-loop-helix factor, Repression of seedling growth in the dark (Os01t0286100-01)
Sequence	AGGTCCCCCCACGCCACAGCCTCTTATCCCACACGCGGACCAACAGCGCCGCCCCGCCCG TCCCCCGCTTCACCTTCGGCTTCGACTTCGGCTTCGTTTCCTCTTCTCTTCGTCTCTCCC TCCCTCCAGCGAAAGAAAGAGAGAGCTCACCTCGCGTTGCCCGGCCGGCCGCGGAGGAGA GCACGGCTTCGCATTCGGCTGGAGCTCTCGTCTCTGCACTCGGAGTACAGCTGCAAACTC CTCCTTCCTTGATTTCTTCACCCTGTCTCCACGGACTGCACAGATGTCCGACGGCAACGA CTTCGCCGAGCTGCTGTGGGAGAACGGCCAGGCGGTGGTGCACGGGAGGAAGAAGCACCC GCAGCCGGCCTTCCCGCCGTTCGGCTTCTTCGGTGGCACCGGCGGTGGCGGCGGCGGCAG CAGTAGTAGAGCCCAGGAGAGGCAGCCCGGCGGCATCGATGCGTTCGCCAAGGTGGGGGG CGGCTTCGGCGCCTTGGGCATGGCTCCGGCGGTGCACGACTTCGCTTCTGGCTTCGGCGC CACCACGCAGGACAACGGTGATGATGACACCGTTCCGTGGATCCATTACCCCATAATTGA CGATGAAGACGCCGCCGCCCCTGCTGCTCTCGCAGCAGCGGACTATGGCTCCGACTTCTT CTCCGAGCTCCAGGCGGCGGCGGCTGCCGCGGCGGCCGCCGCGCCGCCGACCGATCTCGC CTCTCTGCCAGCCTCCAATCACAACGGCGCCACCAATAACAGAAATGCTCCGGTTGCCAC CACCACCACCAGGGAACCCTCCAAGGAAAGCCACGGCGGCCTGTCGGTTCCCACCACCCG AGCCGAGCCGCAGCCGCAGCCACAGCTCGCCGCAGCCAAGCTGCCTCGGTCGAGCGGCAG CGGCGGCGGCGAGGGCGTGATGAACTTCTCGCTCTTCTCCCGCCCGGCCGTCCTGGCGAG GGCGACGCTGGAGAGCGCGCAGAGGACGCAGGGCACCGACAATAAGGCGTCCAATGTCAC CGCGAGCAACCGCGTCGAGTCGACGGTCGTGCAGACGGCGAGCGGGCCAAGGAGCGCACC GGCGTTCGCCGATCAGAGGGCGGCGGCGTGGCCGCCGCAGCCGAAGGAGATGCCGTTCGC GTCCACGGCAGCCGCTCCCATGGCCCCGGCCGTTAACCTGCACCACGAGATGGGCCGTGA CAGGGCAGGCCGAACCATGCCTGTCCACAAAACCGAGGCGAGGAAGGCACCTGAGGCCAC GGTCGCGACATCGTCGGTGTGCTCCGGCAACGGAGCTGGGAGTGACGAGCTGTGGCGCCA GCAGAAGCGGAAGTGCCAGGCCCAGGCAGAGTGCTCAGCTAGCCAAGACGATGATCTTGA CGATGAACCTGGAGTATTGAGAAAATCTGGAACCAGGAGCACGAAACGCAGCCGCACAGC TGAGGTTCACAATTTATCAGAAAGGAGGAGAAGGGACAGGATCAATGAAAAGATGCGCGC TCTGCAAGAACTCATTCCCAACTGCAACAAGATTGATAAAGCCTCGATGCTGGATGAAGC TATAGAGTACCTCAAAACCCTTCAGCTTCAAGTACAGATGATGTCCATGGGAACTGGGCT GTGCATTCCTCCAATGCTATTACCAACAGCCATGCAGCACTTGCAAATTCCACCGATGGC TCATTTCCCTCATCTCGGCATGGGATTGGGGTACGGGATGGGCGTCTTCGACATGAGCAA CACTGGAGCACTTCAGATGCCACCCATGCCTGGTGCTCACTTTCCCTGCCCAATGATCCC AGGTGCGTCACCACAAGGTCTTGGGATCCCTGGCACAAGCACCATGCCAATGTTTGGGGT TCCTGGGCAAACAATTCCTTCGTCAGCGTCTAGTGTACCACCATTTGCATCTTTGGCTGG TCTTCCTGTTAGGCCAAGCGGGGTCCCTCAAGTATCAGGCGCCATGGCTAACATGGTGCA AGACCAGCAACAAGGCATAGCGAATCAACAGCAGCAATGTCTGAACAAGGAAGCTATACA GGGAGCAAATCCAGGTGATTCACAAATGCAGATCATCATGCAGGGTGACAACGAGAATTT TAGGATACCCTCTTCAGCCCAAACAAAAAGCAGTCAATTTTCAGATGGTACCGGCAAGGG GACCAACGCTAGAGAGAGAGATGGGGCTGAAACATAAAGAAAGGCCAGTAGGTGTAACTT GACTTTCATGCTAAATTTGAGATCTACCACTGAAATCTGCAGAATGTTCCTGTCCTAAAA AGATCAATGGCTGAGGAATTTCATGTACGACCAACTAACAACTTCCAGATATGAAAGTTA GCAATTCATACTGGGAGAACTTACTTGAGTATCAAGATCCACGAGGCAGATGTATCAGCC AAGATGCCCCAAAATTTTGTGTAAAATGTAGATGGTAGAAGATGCTACCAGGTTACAAGC TGTAATTCTTGACTTCCAGTGCAGTTTCCTATGAGTAGTTTTTGCCCTATCTG