Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0280400-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:9962807:9966715:1 gene:Os01g0280400 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-binding protein. (Os01t0280400-00)
Sequence

ATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCTACCAAGCTTTGAGT
GCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTAGAAGAG
CATCATGAGCGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAACCATTGGTCTGC
CAATCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGTTTTCTCTTCTCAGGCCGGT
GCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCA
CCAGAAGCTGATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACC
ATTGATGCAATTGGCTTGTCTCAAGTGGAGGCTGATGCAAAACCTGAGGAGCCGATAAAG
AAGTCACAATCCACTCTTCTTAAGGCTTTGCTGGTATCTCCAAGGGTTGATGTCGCTGGA
GCAACGAAAAAATGGCTTAATGATGGCAATACATTGGAAAGAAGTGAACTCTTTTATGTC
CTTCTTAGTCTTCGGAAGCGGAAGCTCTACACCAAAGCCTTGCAGCTTCTGGAGTATGTT
GAAGAATCCAAACTATTTGATCTTGGAGAACGTGATTATGCTTCACGTGTGGATTTGGTA
GCTAAAGTCCACGGTATTTACAAAGCTGAAAAGTATATTGAGAATGTTCCTGCATCTCAT
AGGGGTGAGGTTGTATACAGGACTCTTTTGGCTAACTGTGTGGCTATAGCCAATGTGAAA
AAAACAGAACAAGTCTTCAATAAGATGAAGGACCTTGGATTTCCAGTTACCGTATTTTCT
TGCAATCAGCTTCTGCTACTCTACAAGAGAGTGGACAAGAAGAAGCTTGGTGATGTTCTC
ACAATGATGGAAAAGGAGAATGTGAAGCCTTCCCTCTTCACTTATAAGCTCCTTGTAGAC
ACCAAGGGTGCTGCTAGAGATATTGAAGATATGGAGAAGGTCATTCAGGCAATGCAAGCA
GATGGAATTGAACCAGATCTTCTGATTCAAGCCACAATTGCAAGGCACTACATATTTGGT
GGTTATCGTGAGAAAGCTGAGGCAATTTTGGAGCAAATAGAGGGGGATGATATCAATGAA
AACCGTTCTGCTTGCAAATTTGTTTTACCCCTGTATGCTTTTCTTGGCAAAAAAGCTGAT
GTGGAAAGGATCTGGAAGGTTTGTGAGGTCAATGCTCGTCTAGATGAGTGCATGTCTGCT
ATAGAGGCTTTTGGTAAGCTTGGAGATGTTGAAAAGGCCGAGGAGATATTTGAGAATATG
TTCAAGACATGGAAGACACTCTCGTTCGAATACTACAATGCTATGCTGAAGGTGTATGCC
AACAAAAAGCTTTTTGACAAGGGGAAAGAGCTAGCAAAGCGGATGGGTGATGATGGTTGC
AGACTAGGGCCCTCAACATTGGATTCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTG
GAGAAAGCTGATTCCATATTGCATAAGCTATCATATAAGAACAAGATTAAGCCTTTGTAC
ACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAG
AAATTGTTCAGCAAGGTGCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTG
CTTCTTGAGGCATATCTGAATGCAAAGACCCCACCTTATGGATTCAAGGAGAGGATGAAG
GCTGATGACATTTTCCCCAATAGGGCTGTGGCATCTTTGCTTGCTGCTACCGATCCGTTC
AACAGGAAGAACGCAATGTCTGAATTGCTCGATTAG

Peptide Sequence

PEP ID

Os01t0280400-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:9962807:9966715:1 gene:Os01g0280400 transcript:Os01t0280400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-binding protein. (Os01t0280400-00)
Sequence

MWALRRAGNPLRVRAYQALSARGCANLEVILNADAKNVEEHHERDCQKLDCCHQPKPLVC
QSSFSSGRFMWSRVFSSQAGASSGDKQDELEEGFSDLEVPPEADKKDLDLTSDESSDEDT
IDAIGLSQVEADAKPEEPIKKSQSTLLKALLVSPRVDVAGATKKWLNDGNTLERSELFYV
LLSLRKRKLYTKALQLLEYVEESKLFDLGERDYASRVDLVAKVHGIYKAEKYIENVPASH
RGEVVYRTLLANCVAIANVKKTEQVFNKMKDLGFPVTVFSCNQLLLLYKRVDKKKLGDVL
TMMEKENVKPSLFTYKLLVDTKGAARDIEDMEKVIQAMQADGIEPDLLIQATIARHYIFG
GYREKAEAILEQIEGDDINENRSACKFVLPLYAFLGKKADVERIWKVCEVNARLDECMSA
IEAFGKLGDVEKAEEIFENMFKTWKTLSFEYYNAMLKVYANKKLFDKGKELAKRMGDDGC
RLGPSTLDSLVKLYSDAGEVEKADSILHKLSYKNKIKPLYTTYLMLLDSYSKKGDVHNAE
KLFSKVRQMGYTGRIRQYQLLLEAYLNAKTPPYGFKERMKADDIFPNRAVASLLAATDPF
NRKNAMSELLD

Transcript Sequence

Transcript ID

Os01t0280400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:9962807:9966715:1 gene:Os01g0280400 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-binding protein. (Os01t0280400-00)
Sequence

ATGTGGGCGCTCCGCCGCGCGGGCAACCCCCTCAGGGTCCGTGCCTACCAAGCTTTGAGT
GCCCGTGGTTGTGCAAACCTTGAAGTAATTCTAAATGCAGATGCAAAGAATGTAGAAGAG
CATCATGAGCGGGACTGTCAGAAATTGGATTGCTGTCATCAACCAAAACCATTGGTCTGC
CAATCATCATTCTCATCAGGCCGTTTCATGTGGAGTAGGGTTTTCTCTTCTCAGGCCGGT
GCAAGTTCTGGTGATAAGCAGGATGAGTTGGAGGAAGGGTTTTCTGATCTGGAGGTTCCA
CCAGAAGCTGATAAAAAGGATTTAGATTTGACATCCGATGAGAGTTCTGATGAGGACACC
ATTGATGCAATTGGCTTGTCTCAAGTGGAGGCTGATGCAAAACCTGAGGAGCCGATAAAG
AAGTCACAATCCACTCTTCTTAAGGCTTTGCTGGTATCTCCAAGGGTTGATGTCGCTGGA
GCAACGAAAAAATGGCTTAATGATGGCAATACATTGGAAAGAAGTGAACTCTTTTATGTC
CTTCTTAGTCTTCGGAAGCGGAAGCTCTACACCAAAGCCTTGCAGCTTCTGGAGTATGTT
GAAGAATCCAAACTATTTGATCTTGGAGAACGTGATTATGCTTCACGTGTGGATTTGGTA
GCTAAAGTCCACGGTATTTACAAAGCTGAAAAGTATATTGAGAATGTTCCTGCATCTCAT
AGGGGTGAGGTTGTATACAGGACTCTTTTGGCTAACTGTGTGGCTATAGCCAATGTGAAA
AAAACAGAACAAGTCTTCAATAAGATGAAGGACCTTGGATTTCCAGTTACCGTATTTTCT
TGCAATCAGCTTCTGCTACTCTACAAGAGAGTGGACAAGAAGAAGCTTGGTGATGTTCTC
ACAATGATGGAAAAGGAGAATGTGAAGCCTTCCCTCTTCACTTATAAGCTCCTTGTAGAC
ACCAAGGGTGCTGCTAGAGATATTGAAGATATGGAGAAGGTCATTCAGGCAATGCAAGCA
GATGGAATTGAACCAGATCTTCTGATTCAAGCCACAATTGCAAGGCACTACATATTTGGT
GGTTATCGTGAGAAAGCTGAGGCAATTTTGGAGCAAATAGAGGGGGATGATATCAATGAA
AACCGTTCTGCTTGCAAATTTGTTTTACCCCTGTATGCTTTTCTTGGCAAAAAAGCTGAT
GTGGAAAGGATCTGGAAGGTTTGTGAGGTCAATGCTCGTCTAGATGAGTGCATGTCTGCT
ATAGAGGCTTTTGGTAAGCTTGGAGATGTTGAAAAGGCCGAGGAGATATTTGAGAATATG
TTCAAGACATGGAAGACACTCTCGTTCGAATACTACAATGCTATGCTGAAGGTGTATGCC
AACAAAAAGCTTTTTGACAAGGGGAAAGAGCTAGCAAAGCGGATGGGTGATGATGGTTGC
AGACTAGGGCCCTCAACATTGGATTCACTTGTGAAGCTCTATTCGGATGCAGGAGAGGTG
GAGAAAGCTGATTCCATATTGCATAAGCTATCATATAAGAACAAGATTAAGCCTTTGTAC
ACCACATACTTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAG
AAATTGTTCAGCAAGGTGCGGCAGATGGGTTATACTGGGAGGATTAGACAGTATCAGCTG
CTTCTTGAGGCATATCTGAATGCAAAGACCCCACCTTATGGATTCAAGGAGAGGATGAAG
GCTGATGACATTTTCCCCAATAGGGCTGTGGCATCTTTGCTTGCTGCTACCGATCCGTTC
AACAGGAAGAACGCAATGTCTGAATTGCTCGATTAG