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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0280000-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:9936900:9946480:-1 gene:Os01g0280000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone mRNA exonuclease 1. (Os01t0280000-01);Similar to Histone mRNA exonuclease 1. (Os01t0280000-02)
Sequence

TTAGATAACCAATTTTATCAAATAAACAGGGACCACAGTTTTCCTATTGAGAGTAGAGTT
CAATATCTTCCATTCAAGATGCCCCCTCAAGGTTACCCTCCTGATGCACAACTTCAGGAA
TTTCAATATTTTGTGGTTATTGACTTTGAAGCAACCTGTGACAAGGAGAACAATCCACAT
CCACAAGAAATCATTGAGTTTCCATCTGTCTTGGTTAACAGTGCAACTGGACAACTTGAA
GCTTCCTTCCAAACGTATGTTCGGCCGGCATATAATCAACTTTTGACTGACTTTTGCAAG
GAGCTTACGGGCATTCAACAAATTCAGGTAGACAGAGGTGTGCCTCTAAGTGAGGCATTG
CTCATGCATGATAAGTGGTTGGAGGAAAAAGGGATTAAGCACAAGAACTTCGCTGTTGTG
ACATGGTCTAACTGGGATTGCCGTGTAATGTTGGAATCTGAGTGCAGATTAAAGAGAATC
AGGAAGCCCCCTTACTTTAACAGGTGGATAAACTTGAAGGTTCCTTTCCAGGAAGTGTTT
GGGGGTGTCCGGTGCAACTTAAAAGAGGCAGTTCAGTTGTCTGGCCTTACATGGGAGGGC
CGTGCCCACTGTGGGCTCGATGATGCTCGCAACACCGCTCGCCTCCTTGCATTGCTGATG
CACCGGGGCTTCAAGTTTTCGATCACCAACTCGCTTGTGTGGCAATCTGCCCCGCAGTCA
ATAACGTGCCAGTCGTCCCCTGCGCACTCTCCGTATCCCAACCAATCACACCATAAGCCA
ATGGAAGTGATGGGATCTCCTGTGCAGGTTAACCCATACGCCGGCATCACAGTGAAGAAG
CCGATGTACTGCCACTGCGGCGTGCTGAGCCAGATCAAAGTTACCTACAGACCAGGCCCG
ATGCACGGTCGATATTTCTACGGATGCGGAAACTGGACATCCACAAGGGGGGCAAACTGT
GACTACTGGGTATGGTTGTCATGA

Peptide Sequence

PEP ID

Os01t0280000-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:9936900:9946480:-1 gene:Os01g0280000 transcript:Os01t0280000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone mRNA exonuclease 1. (Os01t0280000-01);Similar to Histone mRNA exonuclease 1. (Os01t0280000-02)
Sequence

LDNQFYQINRDHSFPIESRVQYLPFKMPPQGYPPDAQLQEFQYFVVIDFEATCDKENNPH
PQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFCKELTGIQQIQVDRGVPLSEAL
LMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECRLKRIRKPPYFNRWINLKVPFQEVF
GGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLLALLMHRGFKFSITNSLVWQSAPQS
ITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGITVKKPMYCHCGVLSQIKVTYRPGP
MHGRYFYGCGNWTSTRGANCDYWVWLS

Transcript Sequence

Transcript ID

Os01t0280000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:9936900:9946480:-1 gene:Os01g0280000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Histone mRNA exonuclease 1. (Os01t0280000-01);Similar to Histone mRNA exonuclease 1. (Os01t0280000-02)
Sequence

TTAGATAACCAATTTTATCAAATAAACAGGGACCACAGTTTTCCTATTGAGAGTAGAGTT
CAATATCTTCCATTCAAGATGCCCCCTCAAGGTTACCCTCCTGATGCACAACTTCAGGAA
TTTCAATATTTTGTGGTTATTGACTTTGAAGCAACCTGTGACAAGGAGAACAATCCACAT
CCACAAGAAATCATTGAGTTTCCATCTGTCTTGGTTAACAGTGCAACTGGACAACTTGAA
GCTTCCTTCCAAACGTATGTTCGGCCGGCATATAATCAACTTTTGACTGACTTTTGCAAG
GAGCTTACGGGCATTCAACAAATTCAGGTAGACAGAGGTGTGCCTCTAAGTGAGGCATTG
CTCATGCATGATAAGTGGTTGGAGGAAAAAGGGATTAAGCACAAGAACTTCGCTGTTGTG
ACATGGTCTAACTGGGATTGCCGTGTAATGTTGGAATCTGAGTGCAGATTAAAGAGAATC
AGGAAGCCCCCTTACTTTAACAGGTGGATAAACTTGAAGGTTCCTTTCCAGGAAGTGTTT
GGGGGTGTCCGGTGCAACTTAAAAGAGGCAGTTCAGTTGTCTGGCCTTACATGGGAGGGC
CGTGCCCACTGTGGGCTCGATGATGCTCGCAACACCGCTCGCCTCCTTGCATTGCTGATG
CACCGGGGCTTCAAGTTTTCGATCACCAACTCGCTTGTGTGGCAATCTGCCCCGCAGTCA
ATAACGTGCCAGTCGTCCCCTGCGCACTCTCCGTATCCCAACCAATCACACCATAAGCCA
ATGGAAGTGATGGGATCTCCTGTGCAGGTTAACCCATACGCCGGCATCACAGTGAAGAAG
CCGATGTACTGCCACTGCGGCGTGCTGAGCCAGATCAAAGTTACCTACAGACCAGGCCCG
ATGCACGGTCGATATTTCTACGGATGCGGAAACTGGACATCCACAAGGGGGGCAAACTGT
GACTACTGGGTATGGTTGTCATGAAAGAAAATGAAATCCTGCCTCCATGCGAAATCCGAA
ATCCGAAGGAGGGCAAAGACCTGGAGCTTTTAACAAGGGAGGCTACTAGTTTGCAGTTGG
TTTGGCTTGCTGCGCCTCCCTCGTCGTATATATGATATAACTTTGCTCATAAGACTATTG
GAAGTTTGAACTAGGTAGTGTCTAACCTGTCAATACTGACTTCTGTTGATAGAAGAGAAT
GGGGGGGATCAGATGCTGCTTAGGATGCTTTATCCATGAATAATCTTAAGTTTGTGGACG
CTTGGTTTTAACTTAAAAGATGGGACCATCGTAGGTGTGATTTGTGCGACAAGATGTCTG
AAGTTTGGGCTTGC