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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0278900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:9859354:9860677:1 gene:Os01g0278900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L40. (Os01t0278900-01)
Sequence

ATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCT
CGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTC
CAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTA
GTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAG
GAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATC
ATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTT
GTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTC
AAGAACGTCTAA

Peptide Sequence

PEP ID

Os01t0278900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:9859354:9860677:1 gene:Os01g0278900 transcript:Os01t0278900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L40. (Os01t0278900-01)
Sequence

MALLLSPTVSFLASSSASPPRARALPASANVASTIPAPRLQCKNLSSQSPLNASFTKKRL
VSVHASAEAGAEEAGTDQPEEPKPTVSIETMPLETKQKMIMEQRAKMKLAKKLRQRRRRL
VQKRRLRKKGRWPPSKMKKLKNV

Transcript Sequence

Transcript ID

Os01t0278900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:9859354:9860677:1 gene:Os01g0278900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L40. (Os01t0278900-01)
Sequence

GGCTGACGACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTC
TCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTC
CCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTC
TCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCC
TCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACG
GTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCG
AAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGG
CTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCA
GCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTA
TTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAA
AATGTGATTATTTCTTTCCCGATG