Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0277600-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:9738449:9744876:-1 gene:Os01g0277600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AMINOPHOSPHOLIPID ATPASE 2 description:Similar to aminophospholipid ATPase. (Os01t0277600-00)
Sequence

ATGGCTTCCGGGCGCCCGCTGCTCGACGCCTCGCCGCGGCCGACGCAGCAGCCGCCGGCG
TCATCGCTGCTCCCGCCGCCGCAGCCGGAGCCGCCCCTCCGAGCCGACCGCCTCGCGTTC
TCCCTCGAGGTGCCCGACCCCTTCCGCCGGGAGCCCGACCCGTCGTCGGCCGCGTCGCAG
CGGGGGGAGGAGGAGGGGGGCGGCGAGGAGGAGTCCCGCGCGGTTGTTGTCGGGGAGCCC
TCGTCTTCGGAGGCGGCGGCGGGGTTCGCCGGGAACGGCGTACGGACGGCGAAGTACTCG
GTGCTGACGTTCCTGCCGCGGAACCTGTTCGAGCAGTTCCGGCGGCTGTCGTACGTCTAC
TTCCTCGCCATCACCGTGCTCAACCAGCTCCCCCAGGTCGCCGTCTTCGGCCGCGGCGCC
TCCGTGCTCCCGCTCGCCTTCGTCCTCTTCGTCACCGCCGTCAAGGACGCCTACGAGGAC
CTCCGCCGCCACCGCTCCGACCGCCAGGAGAACAACCGCCTCGCCAGGGTCCTCCTGGCG
CCGCCCGCCGCGGGGGAGTTCGCGCCCAAGAAATGGAAGCACATCCGCGTCGGGGACGTC
GTCCGCGTCGCCTCCAGCGAGACGCTCCCTGCCGACATGGTGCTCCTCGCCACCAGCGAC
CCCTCCGGCGTCGCGCACGTCCAGACCGTCAATCTTGACGGGGAGACCAACCTCAAGACG
AGGTATGCTAAGCAGGAGACGCAACTGAGGTTCTCGCAGGACGGTGGAATCGGCGGTGTC
CTTCATTGTGAGCGGCCAAACAGGAACATCTATGGATTTCAGGCGAATTTGGAGATTGAT
GGCAAGCGTGTCTCGCTAGGGCCATCGAACATTGTGCTCCGTGGATGTGAGCTCAAGAAT
ACCACCTGGGCGATAGGGGTTGTTGTGTATGCTGGAAAGGAGACCAAGGTCATGCTTAAT
AGCTCCGGGGCGCCGTCGAAACGGAGCCGGTTGGAGACACAGTTGAACCGGGAGACTGTC
ATACTGTCCATTATGCTCATTGGGATGTGCACGACCGCAAGTGTGCTCGCGGGGATTTGG
ATACTGAATCACCGTGGGGATTTGGAATTCACCCAGTTCTTTAGGGAGAAGGATTACACG
ACAGGGAAGAACTACAATTACTATGGCATGGGGATGCAGATATTCATTACATTCCTCATG
GCGGTGATTGTATATCAGGTCATCATTCCGATCTCTTTGTATATATCAATGGAGTTGGTA
CGGCTTGGGCAGGCATATTTCATGGGTGCTGACAGAGATTTGTATGATGAGTCATCAAGG
TCAAAGTTCCAATGCAGGGCCCTGAATATAAACGAGGATCTAGGACAGATTAAATATGTA
TTTTCTGATAAGACAGGGACGCTGACAGAGAACAAGATGGAGTTCCAGTGTGCATCAATT
CGGGGGGTTGATTACTGTTCTGGCAAAGATTCATGCGGATACTCAGTTGTAGTCGATGAT
CTCCTATGGACACCCAAGATGGCAGTCAAGATTGATCATCGGCTTTTGAAGTTACTGAGG
GGTGGTGGCACAGATGAGGAAACAAAGCTTGTCCTCGAATTCTTCCTTGCTCTTGCTGCA
TGTAATACCATTGTGCCACTTGTCCTAGATACTCGTGATTCTAAGCAAAAGTTGATTGAT
TATCAGGGTGAGTCCCCTGATGAGCAGGCACTAGTGTATGCTGCGGCATCTTATGGCATT
GTGCTTGTTGAGCGAACATCTGGTTATGTGGTGATTGATGTCCTTGGTGACAGACAGAGA
TTTGATATATTAGGACTTCATGAGTTTGATAGTGATCGTAAGAGGATGTCTGTCATAGTT
GGCTGCCCCGATAAGACTGTTAAGCTATATGTGAAAGGTGCGGACAGTTCATTGTTTGGA
ATTACCAAAAATTCATTAGATCTGGACATTGTTCGTGCTACAGAGGCACACCTCCACAAA
TATTCATCGTTTGGTCTAAGAACTCTCGTTATTGGCATGCGTGAATTGAGTCAACCTGAG
TTTGAGGAGTGGCAATTGGCATATGAAAATGCTAGCACGTCAGTACTTGGAAGGGGAAAT
TTACTCCGATCAGTTGCGGCCAATATAGAGAACAATATCCGCATATTGGGGGCTACTGGG
ATAGAAGATAAGCTTCAAGATGGGGTTCCAGAAACAATAGAATCTCTTCGACAAGCAGAC
ATAAAGGTTTGGATTTTAACAGGAGATAAGCAGGAGACAGCAATTTCTATTGGCTACTCT
TGTAAACTGCTGACCAATGACATGACACAAATTGTGATAAACAACAACTCAAAGGAGTCT
TGTAAGAGGAGTCTCGAGGAAGCACATGCAACGATTAAGAAGCTCAGAATTGCTTCAACT
GGCACACAGAGTCCAGAATTAGCATCAGAATCTGCTGGTGTAACTCTTGCGTTAATTGTA
GATGGTAACAGCCTGGTTTACATACTTGAGACAGAGTTGCAAGAAGAGCTTTTCAAAGTG
GCAAGAGAATGTAGTGTTGTATTGTGTTGTCGGGTGGCCCCGTTACAAAAGGCAGGGATA
GTTGCACTTATCAAAAACCGAACAGATGACATGACCTTAGCAATTGGTGATGGTGCAAAT
GATGTTTCAATGATTCAAATGGCTGATGTTGGTGTTGGCATCAGTGGTCAAGAAGGACGG
CAGGCTGTAATGGCATCAGATTTTGCGATGGGCCAATTCAGATTCTTGGTCCCTCTTCTA
TTAGTTCATGGCCATTGGAATTATCAAAGAATGTCATATATGATCCTCTACAACTTTTAC
AAGAATGCGACATTTGTCTTGGTTCTTTTCTGGTATGTACTTTATACAGCATTCACTCTG
ACAACTGCTATCACAGAATGGAGTAGCCTTTTGTATACTGTGCTATATACATCCCTTCCA
ACAATTGTTGTTGGTATTCTTGACAAGGATCTTAGTAAGGAAACACTACTAGCTTATCCA
AAGCTATATGGATCTGGCCAAAGGGATGAGAAGTATAATGTAAATTTGTTTGTCCTCAAT
ATGCTCGAAGCGCTATGGCAAAGTCTGGTTGTTTTCTACATGCCATATTTTGCATATAGA
CAAAGTACGATAGATATGTCTAGTCTGGGAGATCTATGGGCACTTGCCCCTGTCATTGTT
GTAAATATGCTACTAGCCATGGACATCTTTCGGTGGAATTGGATCGTACATGCTTTTGTG
TGGGGAACAATAGCAGCAACAACCATTTGCCTCTTTGTGATCGACTCCATTTGGTTTCTT
CCTGGATATGGGGCCATCTTTCATATAATGGGGACAGGTTTGTTTTGGTTACTGCTGCTT
ATCATTGTTGTTGCAGCAATGGTACCACATTTTGTAATCAAGGCCTTTACAGAGTATTTT
ACCCCCAGTGATATTCAAGTTGCCCGAGAGATAGAAAAATTCGAGAATGTAAATCAGGTG
AACCGTTCAGAAGTTCCAATGACACGTCTGCATGACCCAAGGAGATAG

Peptide Sequence

PEP ID

Os01t0277600-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:9738449:9744876:-1 gene:Os01g0277600 transcript:Os01t0277600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AMINOPHOSPHOLIPID ATPASE 2 description:Similar to aminophospholipid ATPase. (Os01t0277600-00)
Sequence

MASGRPLLDASPRPTQQPPASSLLPPPQPEPPLRADRLAFSLEVPDPFRREPDPSSAASQ
RGEEEGGGEEESRAVVVGEPSSSEAAAGFAGNGVRTAKYSVLTFLPRNLFEQFRRLSYVY
FLAITVLNQLPQVAVFGRGASVLPLAFVLFVTAVKDAYEDLRRHRSDRQENNRLARVLLA
PPAAGEFAPKKWKHIRVGDVVRVASSETLPADMVLLATSDPSGVAHVQTVNLDGETNLKT
RYAKQETQLRFSQDGGIGGVLHCERPNRNIYGFQANLEIDGKRVSLGPSNIVLRGCELKN
TTWAIGVVVYAGKETKVMLNSSGAPSKRSRLETQLNRETVILSIMLIGMCTTASVLAGIW
ILNHRGDLEFTQFFREKDYTTGKNYNYYGMGMQIFITFLMAVIVYQVIIPISLYISMELV
RLGQAYFMGADRDLYDESSRSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASI
RGVDYCSGKDSCGYSVVVDDLLWTPKMAVKIDHRLLKLLRGGGTDEETKLVLEFFLALAA
CNTIVPLVLDTRDSKQKLIDYQGESPDEQALVYAAASYGIVLVERTSGYVVIDVLGDRQR
FDILGLHEFDSDRKRMSVIVGCPDKTVKLYVKGADSSLFGITKNSLDLDIVRATEAHLHK
YSSFGLRTLVIGMRELSQPEFEEWQLAYENASTSVLGRGNLLRSVAANIENNIRILGATG
IEDKLQDGVPETIESLRQADIKVWILTGDKQETAISIGYSCKLLTNDMTQIVINNNSKES
CKRSLEEAHATIKKLRIASTGTQSPELASESAGVTLALIVDGNSLVYILETELQEELFKV
ARECSVVLCCRVAPLQKAGIVALIKNRTDDMTLAIGDGANDVSMIQMADVGVGISGQEGR
QAVMASDFAMGQFRFLVPLLLVHGHWNYQRMSYMILYNFYKNATFVLVLFWYVLYTAFTL
TTAITEWSSLLYTVLYTSLPTIVVGILDKDLSKETLLAYPKLYGSGQRDEKYNVNLFVLN
MLEALWQSLVVFYMPYFAYRQSTIDMSSLGDLWALAPVIVVNMLLAMDIFRWNWIVHAFV
WGTIAATTICLFVIDSIWFLPGYGAIFHIMGTGLFWLLLLIIVVAAMVPHFVIKAFTEYF
TPSDIQVAREIEKFENVNQVNRSEVPMTRLHDPRR

Transcript Sequence

Transcript ID

Os01t0277600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:9738449:9744876:-1 gene:Os01g0277600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AMINOPHOSPHOLIPID ATPASE 2 description:Similar to aminophospholipid ATPase. (Os01t0277600-00)
Sequence

AAAATTCCAAACCGAAACCTCTCGATTCTTCCTCTCCAAGCTGCCTCGCCGTCGCCGGCG
ACCTCCCGCCCAAATCCGACGCCACCGCGCGCCGCCATGCCTCCGGTGGTGGCCCACTAG
CCCTGCTCGCTCCGGCTTCCCCGACTCCATGGCTTCCGGGCGCCCGCTGCTCGACGCCTC
GCCGCGGCCGACGCAGCAGCCGCCGGCGTCATCGCTGCTCCCGCCGCCGCAGCCGGAGCC
GCCCCTCCGAGCCGACCGCCTCGCGTTCTCCCTCGAGGTGCCCGACCCCTTCCGCCGGGA
GCCCGACCCGTCGTCGGCCGCGTCGCAGCGGGGGGAGGAGGAGGGGGGCGGCGAGGAGGA
GTCCCGCGCGGTTGTTGTCGGGGAGCCCTCGTCTTCGGAGGCGGCGGCGGGGTTCGCCGG
GAACGGCGTACGGACGGCGAAGTACTCGGTGCTGACGTTCCTGCCGCGGAACCTGTTCGA
GCAGTTCCGGCGGCTGTCGTACGTCTACTTCCTCGCCATCACCGTGCTCAACCAGCTCCC
CCAGGTCGCCGTCTTCGGCCGCGGCGCCTCCGTGCTCCCGCTCGCCTTCGTCCTCTTCGT
CACCGCCGTCAAGGACGCCTACGAGGACCTCCGCCGCCACCGCTCCGACCGCCAGGAGAA
CAACCGCCTCGCCAGGGTCCTCCTGGCGCCGCCCGCCGCGGGGGAGTTCGCGCCCAAGAA
ATGGAAGCACATCCGCGTCGGGGACGTCGTCCGCGTCGCCTCCAGCGAGACGCTCCCTGC
CGACATGGTGCTCCTCGCCACCAGCGACCCCTCCGGCGTCGCGCACGTCCAGACCGTCAA
TCTTGACGGGGAGACCAACCTCAAGACGAGGTATGCTAAGCAGGAGACGCAACTGAGGTT
CTCGCAGGACGGTGGAATCGGCGGTGTCCTTCATTGTGAGCGGCCAAACAGGAACATCTA
TGGATTTCAGGCGAATTTGGAGATTGATGGCAAGCGTGTCTCGCTAGGGCCATCGAACAT
TGTGCTCCGTGGATGTGAGCTCAAGAATACCACCTGGGCGATAGGGGTTGTTGTGTATGC
TGGAAAGGAGACCAAGGTCATGCTTAATAGCTCCGGGGCGCCGTCGAAACGGAGCCGGTT
GGAGACACAGTTGAACCGGGAGACTGTCATACTGTCCATTATGCTCATTGGGATGTGCAC
GACCGCAAGTGTGCTCGCGGGGATTTGGATACTGAATCACCGTGGGGATTTGGAATTCAC
CCAGTTCTTTAGGGAGAAGGATTACACGACAGGGAAGAACTACAATTACTATGGCATGGG
GATGCAGATATTCATTACATTCCTCATGGCGGTGATTGTATATCAGGTCATCATTCCGAT
CTCTTTGTATATATCAATGGAGTTGGTACGGCTTGGGCAGGCATATTTCATGGGTGCTGA
CAGAGATTTGTATGATGAGTCATCAAGGTCAAAGTTCCAATGCAGGGCCCTGAATATAAA
CGAGGATCTAGGACAGATTAAATATGTATTTTCTGATAAGACAGGGACGCTGACAGAGAA
CAAGATGGAGTTCCAGTGTGCATCAATTCGGGGGGTTGATTACTGTTCTGGCAAAGATTC
ATGCGGATACTCAGTTGTAGTCGATGATCTCCTATGGACACCCAAGATGGCAGTCAAGAT
TGATCATCGGCTTTTGAAGTTACTGAGGGGTGGTGGCACAGATGAGGAAACAAAGCTTGT
CCTCGAATTCTTCCTTGCTCTTGCTGCATGTAATACCATTGTGCCACTTGTCCTAGATAC
TCGTGATTCTAAGCAAAAGTTGATTGATTATCAGGGTGAGTCCCCTGATGAGCAGGCACT
AGTGTATGCTGCGGCATCTTATGGCATTGTGCTTGTTGAGCGAACATCTGGTTATGTGGT
GATTGATGTCCTTGGTGACAGACAGAGATTTGATATATTAGGACTTCATGAGTTTGATAG
TGATCGTAAGAGGATGTCTGTCATAGTTGGCTGCCCCGATAAGACTGTTAAGCTATATGT
GAAAGGTGCGGACAGTTCATTGTTTGGAATTACCAAAAATTCATTAGATCTGGACATTGT
TCGTGCTACAGAGGCACACCTCCACAAATATTCATCGTTTGGTCTAAGAACTCTCGTTAT
TGGCATGCGTGAATTGAGTCAACCTGAGTTTGAGGAGTGGCAATTGGCATATGAAAATGC
TAGCACGTCAGTACTTGGAAGGGGAAATTTACTCCGATCAGTTGCGGCCAATATAGAGAA
CAATATCCGCATATTGGGGGCTACTGGGATAGAAGATAAGCTTCAAGATGGGGTTCCAGA
AACAATAGAATCTCTTCGACAAGCAGACATAAAGGTTTGGATTTTAACAGGAGATAAGCA
GGAGACAGCAATTTCTATTGGCTACTCTTGTAAACTGCTGACCAATGACATGACACAAAT
TGTGATAAACAACAACTCAAAGGAGTCTTGTAAGAGGAGTCTCGAGGAAGCACATGCAAC
GATTAAGAAGCTCAGAATTGCTTCAACTGGCACACAGAGTCCAGAATTAGCATCAGAATC
TGCTGGTGTAACTCTTGCGTTAATTGTAGATGGTAACAGCCTGGTTTACATACTTGAGAC
AGAGTTGCAAGAAGAGCTTTTCAAAGTGGCAAGAGAATGTAGTGTTGTATTGTGTTGTCG
GGTGGCCCCGTTACAAAAGGCAGGGATAGTTGCACTTATCAAAAACCGAACAGATGACAT
GACCTTAGCAATTGGTGATGGTGCAAATGATGTTTCAATGATTCAAATGGCTGATGTTGG
TGTTGGCATCAGTGGTCAAGAAGGACGGCAGGCTGTAATGGCATCAGATTTTGCGATGGG
CCAATTCAGATTCTTGGTCCCTCTTCTATTAGTTCATGGCCATTGGAATTATCAAAGAAT
GTCATATATGATCCTCTACAACTTTTACAAGAATGCGACATTTGTCTTGGTTCTTTTCTG
GTATGTACTTTATACAGCATTCACTCTGACAACTGCTATCACAGAATGGAGTAGCCTTTT
GTATACTGTGCTATATACATCCCTTCCAACAATTGTTGTTGGTATTCTTGACAAGGATCT
TAGTAAGGAAACACTACTAGCTTATCCAAAGCTATATGGATCTGGCCAAAGGGATGAGAA
GTATAATGTAAATTTGTTTGTCCTCAATATGCTCGAAGCGCTATGGCAAAGTCTGGTTGT
TTTCTACATGCCATATTTTGCATATAGACAAAGTACGATAGATATGTCTAGTCTGGGAGA
TCTATGGGCACTTGCCCCTGTCATTGTTGTAAATATGCTACTAGCCATGGACATCTTTCG
GTGGAATTGGATCGTACATGCTTTTGTGTGGGGAACAATAGCAGCAACAACCATTTGCCT
CTTTGTGATCGACTCCATTTGGTTTCTTCCTGGATATGGGGCCATCTTTCATATAATGGG
GACAGGTTTGTTTTGGTTACTGCTGCTTATCATTGTTGTTGCAGCAATGGTACCACATTT
TGTAATCAAGGCCTTTACAGAGTATTTTACCCCCAGTGATATTCAAGTTGCCCGAGAGAT
AGAAAAATTCGAGAATGTAAATCAGGTGAACCGTTCAGAAGTTCCAATGACACGTCTGCA
TGACCCAAGGAGATAGCTATAGAAAATTCTCCTTTATAGAAATTTCTTTTTTTTTCTGTT
GTTTTTCGCCTCTTTGGTGTGTATACGAGTAAATTCATTTAGCACTAAGGTGATAGGTTT
AGCCTCCAAGATGTATGTATGTAGGCATGTGTTCATCTAACATTTACTGAAAAGGAAATA
TAAATTGTT