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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0276600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:9690348:9692094:1 gene:Os01g0276600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING Finger Protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0276600-01)
Sequence

ATGGCGGAGGAGGCGGCGGCAGGCGGGCTGTACTACTGCCACATGTGCGCTTCGACGGTG
AGCGCCGTGGCGGCGGCGGAGGGGGAGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGC
TTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCC
TCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCCGTCCGC
CGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGC
GACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTC
ATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCC
GCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCG
CTGGCCGACTACTTCCTCGGCCCCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGC
GACGCGGGGCGGCAGGGCACGCTCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACG
GTGGAGGTGGCCGCCGGGGGCGACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTAC
GCCGCCGGCGAGCGCGCCACGGAAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATC
GTGCCGTGGCTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGAC
GACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGG
CGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGGAGGCCTGGGCAGGTTGCCGGCCGTG
ATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCGTCGACTTCCGGCAGCAGC
TCGCACGCGCAGCAGCACAGCGACGAGTGA

Peptide Sequence

PEP ID

Os01t0276600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:9690348:9692094:1 gene:Os01g0276600 transcript:Os01t0276600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING Finger Protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0276600-01)
Sequence

MAEEAAAGGLYYCHMCASTVSAVAAAEGEVEIKCPYCHSGFVEEIESARGVATGGGGAIS
SVWAPIIDGMVGGGGGDAVRRHRRSRRLADAAGADDGYYRDLALLDFSESRRRTAALLLL
MQEFRERQLQRLESATATISAAAAEAGAVVGTSRDAEGVALADYFLGPGLDALMQRVGDG
DAGRQGTLPAKKEAVESMPTVEVAAGGDCDSACAVCLEDYAAGERATEMPCRHRFHAKCI
VPWLKMHSSCPVCRFQLPTDDDDDSSKSARGGAAHSGGGRRLSQPAPRVDGGGLGRLPAV
MQELRSILSQPSPASTSGSSSHAQQHSDE

Transcript Sequence

Transcript ID

Os01t0276600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:9690348:9692094:1 gene:Os01g0276600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING Finger Protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0276600-01)
Sequence

TCTGGCCCTGATCTCCTCCCCCTCTCACTTGCCCTGCCCAAGCCCAAGAGAGGAATCCAA
GCTGCTGCATTGACGGCGGCGGCGGCGGCGGCGGCGAGGAGATCGGGAGCAATGGCGGAG
GAGGCGGCGGCAGGCGGGCTGTACTACTGCCACATGTGCGCTTCGACGGTGAGCGCCGTG
GCGGCGGCGGAGGGGGAGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGCTTCGTCGAG
GAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGG
GCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCCGTCCGCCGCCACCGC
CGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCC
CTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAG
TTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCG
GCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGAC
TACTTCCTCGGCCCCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGGG
CGGCAGGGCACGCTCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACGGTGGAGGTG
GCCGCCGGGGGCGACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTACGCCGCCGGC
GAGCGCGCCACGGAAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGG
CTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACGAC
GACTCCTCCAAGTCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGGCGGTTGTCC
CAGCCGGCGCCGCGGGTCGACGGGGGAGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAG
CTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCGTCGACTTCCGGCAGCAGCTCGCACGCG
CAGCAGCACAGCGACGAGTGATGACGACTCAGGATGGTCGCCGGTCACCGGCGGTGCTGC
TGCTCCGGCGACCGGCGGAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCG
GGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTC
TCCCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGT
TCGGCGG