Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0273300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:9454976:9456923:1 gene:Os01g0273300 gene_biotype:protein_coding transcript_biotype:protein_coding description:BSD domain containing protein. (Os01t0273300-01)
Sequence

ATGAATTTCTTCAGCTCCGTCCTCTCCGCCGCCGGCGTCGGCGGCGACGAGCACGAGGAG
GAGCGGGGAGAGGGGGAGGAAGCCGCGGCGGAGCAGGGGGAGGAGGGGGAGGCGGAGTCC
GGCGGCGGGTGGAGCTTCGGTGGGCTGATCAAGACGTTGGCGGAGGAGATCGATGTGCGG
CCGCGCGACGAGCAGGAGGCGGAGGAGGGCGGGGAGGAGGTGGCGGAGGGGAAGGGGGAG
GTCGAGGAGGAGGCTGATGCGGGCGGCGGGTGGATCTTCGGCGGGCTGATCAAGACGTTG
GCGGAGGAGATAGAGGAGCAGCGGAAGGTGAACAGCCAGCTGGAAGCCGAGGAGGAGGCG
GCGGCTGCTGCTGCTGCGGCTGCCGCGGCGGCGGCGGAAGAGGAGGGAGGGGAAACCGCG
GGTTCGGGCGACGGCGGGGAGTGGAGCTTCGGGGGCCTGATCCAGACGTTCGCGACGCGG
TCGGAGTCGGTGCTCGAGGGCTACCGCCGCGACATCCAGGACCTCGGCTCGGGCCTCCGC
CTCGAGACGGCAACCCTCCGCGCCGCCGCCGCACGGGCCGCCGCGGCGTTCCCCGGCGCG
CTCGAGGCCGGCGCGTCCGCCGCCTCCAACAGGCTCGAGTCCGTCGGCCAGGCAGTCGAC
GACCTCGGCGCCGCCGCCGCCGTCCTCCTCTCCCACGCCAACGAGGCCCTCCGATCCGTC
GACGCCGACGGCGAGGATGGCGCCGGTGACGGCTCCTCCCATCCCTCCGACTCCGCCTCC
GCCTCCGGCGCCTCCTGGCGCGCGTCATTGCCGTCCAAGAAGTACACCCGTTTCGAGGCG
CAGGTGCTCGCGCTGCGCGCCGACCCTGCCACCTTCACCGAGGAGCCGGAGGATGCCGAT
GGGTTCGCTAAGTGGCGGGATGCGTTCAGAATCGATGAGAGGAAAGAGGAGATCGAGGGG
GTGCTGAAGGAGAGCCCCGGGCTGGAGAGCTTCGTAGAGAGGCTTGTGCCATCGGTGGTA
GACTATGACATGTTCTGGTGCCGGTATTTCTTCGCCGTCGATAAGCTCAGACAAGCCGAG
GATGTCCGCACCAAGCTTGTGACCAGGGCAATGTCAAAGGAGGATGAGGAAGAGCTCAGC
TGGGATGTCGATGATGATGATGAGGATGACGACAATGGTGATCACAAGGAAGGTGCCAAC
ACCGTAGTGAATAAGAAAGAAGAGCAAATTGAGGAGCCTGTTAGCCACAAAACAGAGGAT
GATAAACAAGGAGCGGATACACCTGATGTTTCAGAGGACAAGAAGACTACTCTGGCAGCT
GAGAAGGATGGCAATGGCGAATCCAAGGATGAAGTAGCAGCACCAAAGTCGAGCAATGAC
ATGGGGCGAGAAGAGAAAATCGACTCGTCTAAGGAGAGTGAATTCTCAGCGGCATCTCCT
CCATCTGCACAGGAGGAAGATCTTAGCTGGGAGGAGATCGAAGATGTTGGTGATGAAGAT
GAGAAGAAAAAACCGATTCCACGGTCAAGCCCTCCTAGCAAAGCTGAGGATATCAGAAAA
CGATTTAGTTCTGTCGAAGATGATGAAGAGCTGAGTTGGGATATTGATGAGTGA

Peptide Sequence

PEP ID

Os01t0273300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:9454976:9456923:1 gene:Os01g0273300 transcript:Os01t0273300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:BSD domain containing protein. (Os01t0273300-01)
Sequence

MNFFSSVLSAAGVGGDEHEEERGEGEEAAAEQGEEGEAESGGGWSFGGLIKTLAEEIDVR
PRDEQEAEEGGEEVAEGKGEVEEEADAGGGWIFGGLIKTLAEEIEEQRKVNSQLEAEEEA
AAAAAAAAAAAAEEEGGETAGSGDGGEWSFGGLIQTFATRSESVLEGYRRDIQDLGSGLR
LETATLRAAAARAAAAFPGALEAGASAASNRLESVGQAVDDLGAAAAVLLSHANEALRSV
DADGEDGAGDGSSHPSDSASASGASWRASLPSKKYTRFEAQVLALRADPATFTEEPEDAD
GFAKWRDAFRIDERKEEIEGVLKESPGLESFVERLVPSVVDYDMFWCRYFFAVDKLRQAE
DVRTKLVTRAMSKEDEEELSWDVDDDDEDDDNGDHKEGANTVVNKKEEQIEEPVSHKTED
DKQGADTPDVSEDKKTTLAAEKDGNGESKDEVAAPKSSNDMGREEKIDSSKESEFSAASP
PSAQEEDLSWEEIEDVGDEDEKKKPIPRSSPPSKAEDIRKRFSSVEDDEELSWDIDE

Transcript Sequence

Transcript ID

Os01t0273300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:9454976:9456923:1 gene:Os01g0273300 gene_biotype:protein_coding transcript_biotype:protein_coding description:BSD domain containing protein. (Os01t0273300-01)
Sequence

GATTTATCCCGACGGCCACGCCACCCCACCTCTCCTCCGCCGCCTTCCACCCTCTCTCTC
GAGAGCCCAGATCCAAATCCGAGCGAGCCGATGAATTTCTTCAGCTCCGTCCTCTCCGCC
GCCGGCGTCGGCGGCGACGAGCACGAGGAGGAGCGGGGAGAGGGGGAGGAAGCCGCGGCG
GAGCAGGGGGAGGAGGGGGAGGCGGAGTCCGGCGGCGGGTGGAGCTTCGGTGGGCTGATC
AAGACGTTGGCGGAGGAGATCGATGTGCGGCCGCGCGACGAGCAGGAGGCGGAGGAGGGC
GGGGAGGAGGTGGCGGAGGGGAAGGGGGAGGTCGAGGAGGAGGCTGATGCGGGCGGCGGG
TGGATCTTCGGCGGGCTGATCAAGACGTTGGCGGAGGAGATAGAGGAGCAGCGGAAGGTG
AACAGCCAGCTGGAAGCCGAGGAGGAGGCGGCGGCTGCTGCTGCTGCGGCTGCCGCGGCG
GCGGCGGAAGAGGAGGGAGGGGAAACCGCGGGTTCGGGCGACGGCGGGGAGTGGAGCTTC
GGGGGCCTGATCCAGACGTTCGCGACGCGGTCGGAGTCGGTGCTCGAGGGCTACCGCCGC
GACATCCAGGACCTCGGCTCGGGCCTCCGCCTCGAGACGGCAACCCTCCGCGCCGCCGCC
GCACGGGCCGCCGCGGCGTTCCCCGGCGCGCTCGAGGCCGGCGCGTCCGCCGCCTCCAAC
AGGCTCGAGTCCGTCGGCCAGGCAGTCGACGACCTCGGCGCCGCCGCCGCCGTCCTCCTC
TCCCACGCCAACGAGGCCCTCCGATCCGTCGACGCCGACGGCGAGGATGGCGCCGGTGAC
GGCTCCTCCCATCCCTCCGACTCCGCCTCCGCCTCCGGCGCCTCCTGGCGCGCGTCATTG
CCGTCCAAGAAGTACACCCGTTTCGAGGCGCAGGTGCTCGCGCTGCGCGCCGACCCTGCC
ACCTTCACCGAGGAGCCGGAGGATGCCGATGGGTTCGCTAAGTGGCGGGATGCGTTCAGA
ATCGATGAGAGGAAAGAGGAGATCGAGGGGGTGCTGAAGGAGAGCCCCGGGCTGGAGAGC
TTCGTAGAGAGGCTTGTGCCATCGGTGGTAGACTATGACATGTTCTGGTGCCGGTATTTC
TTCGCCGTCGATAAGCTCAGACAAGCCGAGGATGTCCGCACCAAGCTTGTGACCAGGGCA
ATGTCAAAGGAGGATGAGGAAGAGCTCAGCTGGGATGTCGATGATGATGATGAGGATGAC
GACAATGGTGATCACAAGGAAGGTGCCAACACCGTAGTGAATAAGAAAGAAGAGCAAATT
GAGGAGCCTGTTAGCCACAAAACAGAGGATGATAAACAAGGAGCGGATACACCTGATGTT
TCAGAGGACAAGAAGACTACTCTGGCAGCTGAGAAGGATGGCAATGGCGAATCCAAGGAT
GAAGTAGCAGCACCAAAGTCGAGCAATGACATGGGGCGAGAAGAGAAAATCGACTCGTCT
AAGGAGAGTGAATTCTCAGCGGCATCTCCTCCATCTGCACAGGAGGAAGATCTTAGCTGG
GAGGAGATCGAAGATGTTGGTGATGAAGATGAGAAGAAAAAACCGATTCCACGGTCAAGC
CCTCCTAGCAAAGCTGAGGATATCAGAAAACGATTTAGTTCTGTCGAAGATGATGAAGAG
CTGAGTTGGGATATTGATGAGTGAAAAAACCTCTGCATCACTTAATTTAGTGGTCTGAAA
GTTGTCAGCTTAAAATGTTATCACACTTTTTTCCACTTTGGTGTCAATTGGGATTTCCAC
AGTGCTGGTTGACATATGATGTGAATATTGGATGGTCACTAGTCATTCAAATTCAATGGG
GTTGTTTGTTTGATTACTGCCCCTGTAAAATTTTCAATAGAATGGTAGGGTTCTTCTGTT
ATGAACTTACGATTGGTAATTTGATTTC