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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0257100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:8577244:8577934:-1 gene:Os01g0257100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 5 description:Rapid ALkalinization Factor family protein. (Os01t0257100-01)
Sequence

ATGGCGGCGGCGGCAGTAGCGTTGCTCGCGTTCCTCCTCGCCGCGGCGTCAGCGGCGTCG
TCGGCGTCGGCGGCGGCGGCGACGCTGGTGGAGGGCGGCGTGGTGGGGCGCGCGGCGGTG
GTGATGAGGCGGGGAGGGAGGACGTGCCGTGGCACGGTGGGGGAGTGCATGGAGTTCCTC
GGCGTCGACGGCGAGGGGGAGGACGAGCTGGCGGCGGCGGCGACGGGCAAGCGGCGGGTG
CTGCAGGGCGGGTCGGGGTACATCGGGTACGACGCGCTGCGGCGCGACAGCGTGCCGTGC
TCGCAGCGCGGCGCGTCCTACTACAACTGCCAGCCCGGCGCCGAGGCCAACCCTTACTCC
CGCGGCTGCTCCGCCATCACCCAGTGCAGGGGATGA

Peptide Sequence

PEP ID

Os01t0257100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:8577244:8577934:-1 gene:Os01g0257100 transcript:Os01t0257100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 5 description:Rapid ALkalinization Factor family protein. (Os01t0257100-01)
Sequence

MAAAAVALLAFLLAAASAASSASAAAATLVEGGVVGRAAVVMRRGGRTCRGTVGECMEFL
GVDGEGEDELAAAATGKRRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYS
RGCSAITQCRG

Transcript Sequence

Transcript ID

Os01t0257100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:8577244:8577934:-1 gene:Os01g0257100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 5 description:Rapid ALkalinization Factor family protein. (Os01t0257100-01)
Sequence

ACCAATCTCCACCTTTCTTCCTCGTCGACGAGATCATCGGCATGGCGGCGGCGGCAGTAG
CGTTGCTCGCGTTCCTCCTCGCCGCGGCGTCAGCGGCGTCGTCGGCGTCGGCGGCGGCGG
CGACGCTGGTGGAGGGCGGCGTGGTGGGGCGCGCGGCGGTGGTGATGAGGCGGGGAGGGA
GGACGTGCCGTGGCACGGTGGGGGAGTGCATGGAGTTCCTCGGCGTCGACGGCGAGGGGG
AGGACGAGCTGGCGGCGGCGGCGACGGGCAAGCGGCGGGTGCTGCAGGGCGGGTCGGGGT
ACATCGGGTACGACGCGCTGCGGCGCGACAGCGTGCCGTGCTCGCAGCGCGGCGCGTCCT
ACTACAACTGCCAGCCCGGCGCCGAGGCCAACCCTTACTCCCGCGGCTGCTCCGCCATCA
CCCAGTGCAGGGGATGATCGATCGATCGATCGACCGAGCTAGCTAATTAATGAAATTAAA
TCCAATGCCATGTAGTTCGCAGCAAGAACACACGCACAGTGTCCCCTTGATCATAGCTGA
GCTTATATGCTATAGCTGTCAAGATCTCAGTGTTGTCCTTGCATGCCTCTCATGCTTGAT
TGATTAGATGTGTAATGGTCCTAATGGATGGATGGTGTTGTTTGCTATGCTGCTTGGGTG
AAATTAAAGTGATCAAGATTATGTTTTTTTG