Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0254300-00
CDS Infomation	cds chromosome:IRGSP-1.0:1:8447731:8451489:-1 gene:Os01g0254300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pectin methylesterase 1 description:Pectinesterase (EC 3.1.1.11) (Fragment). (Os01t0254300-00)
Sequence	ATGGCGTCCACCGGCGCGCTGCTTCTGTTGCTCTTGTTTGTGCTTGCGTGCGGCGGCAAT GGCGGCGCGGCCGCCGCGGTGTTCTCCGGGTGTTCGTTCGAGAGCCAGGAGGAGGCCGAG GCGTTCGAGGCCGCGCTGCTGCAGCAGGCGTGCTTCAACGTGACGGCGTTCGGTGGAGGC GGAGGTGGAGGTGGGGGCGAGGGCGGCTGCGTGTCGCGGCTCGACACGGCGCGCGGCGGC GCGGGGAGTGGCCCCGTGCCGGTGCTCCGCGCGGCGGTCCGGGACACGCTCGGCGAGGCG GTGGGCGCCGTGGCGGCCGTGGCGGGGCTCGCGTCGCTGTCCAACCACGCGCGGGAGGAG ATGGCCGTGCGCGACTGCGTCGAGCTGGTGGGGTACTCCGTCGACGAGCTCGGGTGGGCG CTCGACGCCATGGCCGACCCCGACGGCGGCGTCGCCGCGGCGGAGGAGGAGGATGAGACG GAGCCGGAGACGAGGCGCCGCCGCCGCCGCGGCGCGCGCGCCGAGGACGACATCCACGCC TGGCTCAGCGCGGCGATGGGCAACCAGGGCACCTGCCTCGACGGCTTCCACGGCACCGAC AGCCGCCTCCTCCGCCGCGTCGAGTCGGCCGTGACGCAGCTCACTCAGCTCGTCAGCAAC CTCCTCGCCATGCACAAGAAGCTCCGCGACATCACGCCGCAGCACCAACACCAACACCAC CACCACCCCGGCAACAACAACAACAAGAACGGCACAGCCGACGGCGCCGCCGCCGGAGGG GATGACACCGGCCCGTCGTCGGATCTACCGCCATGGGTGACGGACGTCGTCAACGATGTC GAGGAGGAGGTCACGGCGACGCGCGGACGAGGGAGGTCGTCGTCGTCGGGAAGGAAGGCG ATGCGCGTGGACGTGGTGGTGGCGCAGGACGGGAGCGGGCGGTGGCGGACGGTGAGCGAG GCGGTGGCGCGGGCGCCGAGCCACAGCAGGAGGAGGTACGTGATCTACGTGAAGCGAGGG GTGTACGAGGAGAACGTGGAGGTGAGGAAGAAGAAGACGAACATCGTCATCGTCGGCGAG GGGATGGGGGAGACGGTCATCACCGGCAGCCGGAGCATGGCCGCCGGCTGGACCACCTTC CGGAGCGCCACGTTTGCGGTGTCGGGGGCGGGGTTCATCGCACGGGACATGACGATTCGG AACACGGCGGGGCCGGCGGCGCACCAGGCGGTGGCGCTGCGCGTCGACTCCGATCGCTCC GCCTTCTTCCGCATCGCCGTCGAGGGCCACCAGGACACGCTCTACGCGCACTCCCTCCGC CAGTTCTACCGCGACTGCCGCGTCTCCGGCACCGTCGACTTCATCTTCGGCAACGGCATC GCCGTCATCCAGCGCACCACCATCTCTACCCTCCCGCCCGCCGCCGGCCAGAACGCCGGC AGCGTCACGGCGCAGGGCCGGAGGGACCCCAACCAGAACACCGGCTTCGCCCTCCATGCT TGCATCGTGGAGGCCAAGTACCCGACCTACCTCGGACGCCCGTGGAAGCCCTTCTCCCGG GTGGTCGTCATGGAGTCCTACCTCGGCGCAGGTGTCCAGCCGCGCGGATGGCTGGAGTGG GACGGCGACGGCGGCGAGCTCGCCACGCTATTCTACGGGGAGTACCGCAACTATGGGCCT GGCGCCAACATCGGCGGCCGGGTGCGGTGGCCCGGATACCACGTGATCATGGACGCCGCC GTCGCTGTGCGCTTCACCGTGCGGCGGTTCATCGACGGCCTCGCTTGGCTACCCTCCACC GGCGTCACCTTCACCGCTGACCTCAACAGGAAATGA

Peptide Sequence

PEP ID	Os01t0254300-00
PEP Infomation	pep chromosome:IRGSP-1.0:1:8447731:8451489:-1 gene:Os01g0254300 transcript:Os01t0254300-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pectin methylesterase 1 description:Pectinesterase (EC 3.1.1.11) (Fragment). (Os01t0254300-00)
Sequence	MASTGALLLLLLFVLACGGNGGAAAAVFSGCSFESQEEAEAFEAALLQQACFNVTAFGGG GGGGGGEGGCVSRLDTARGGAGSGPVPVLRAAVRDTLGEAVGAVAAVAGLASLSNHAREE MAVRDCVELVGYSVDELGWALDAMADPDGGVAAAEEEDETEPETRRRRRRGARAEDDIHA WLSAAMGNQGTCLDGFHGTDSRLLRRVESAVTQLTQLVSNLLAMHKKLRDITPQHQHQHH HHPGNNNNKNGTADGAAAGGDDTGPSSDLPPWVTDVVNDVEEEVTATRGRGRSSSSGRKA MRVDVVVAQDGSGRWRTVSEAVARAPSHSRRRYVIYVKRGVYEENVEVRKKKTNIVIVGE GMGETVITGSRSMAAGWTTFRSATFAVSGAGFIARDMTIRNTAGPAAHQAVALRVDSDRS AFFRIAVEGHQDTLYAHSLRQFYRDCRVSGTVDFIFGNGIAVIQRTTISTLPPAAGQNAG SVTAQGRRDPNQNTGFALHACIVEAKYPTYLGRPWKPFSRVVVMESYLGAGVQPRGWLEW DGDGGELATLFYGEYRNYGPGANIGGRVRWPGYHVIMDAAVAVRFTVRRFIDGLAWLPST GVTFTADLNRK

Transcript Sequence

Transcript ID	Os01t0254300-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:8447731:8451489:-1 gene:Os01g0254300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pectin methylesterase 1 description:Pectinesterase (EC 3.1.1.11) (Fragment). (Os01t0254300-00)
Sequence	ATGGCGTCCACCGGCGCGCTGCTTCTGTTGCTCTTGTTTGTGCTTGCGTGCGGCGGCAAT GGCGGCGCGGCCGCCGCGGTGTTCTCCGGGTGTTCGTTCGAGAGCCAGGAGGAGGCCGAG GCGTTCGAGGCCGCGCTGCTGCAGCAGGCGTGCTTCAACGTGACGGCGTTCGGTGGAGGC GGAGGTGGAGGTGGGGGCGAGGGCGGCTGCGTGTCGCGGCTCGACACGGCGCGCGGCGGC GCGGGGAGTGGCCCCGTGCCGGTGCTCCGCGCGGCGGTCCGGGACACGCTCGGCGAGGCG GTGGGCGCCGTGGCGGCCGTGGCGGGGCTCGCGTCGCTGTCCAACCACGCGCGGGAGGAG ATGGCCGTGCGCGACTGCGTCGAGCTGGTGGGGTACTCCGTCGACGAGCTCGGGTGGGCG CTCGACGCCATGGCCGACCCCGACGGCGGCGTCGCCGCGGCGGAGGAGGAGGATGAGACG GAGCCGGAGACGAGGCGCCGCCGCCGCCGCGGCGCGCGCGCCGAGGACGACATCCACGCC TGGCTCAGCGCGGCGATGGGCAACCAGGGCACCTGCCTCGACGGCTTCCACGGCACCGAC AGCCGCCTCCTCCGCCGCGTCGAGTCGGCCGTGACGCAGCTCACTCAGCTCGTCAGCAAC CTCCTCGCCATGCACAAGAAGCTCCGCGACATCACGCCGCAGCACCAACACCAACACCAC CACCACCCCGGCAACAACAACAACAAGAACGGCACAGCCGACGGCGCCGCCGCCGGAGGG GATGACACCGGCCCGTCGTCGGATCTACCGCCATGGGTGACGGACGTCGTCAACGATGTC GAGGAGGAGGTCACGGCGACGCGCGGACGAGGGAGGTCGTCGTCGTCGGGAAGGAAGGCG ATGCGCGTGGACGTGGTGGTGGCGCAGGACGGGAGCGGGCGGTGGCGGACGGTGAGCGAG GCGGTGGCGCGGGCGCCGAGCCACAGCAGGAGGAGGTACGTGATCTACGTGAAGCGAGGG GTGTACGAGGAGAACGTGGAGGTGAGGAAGAAGAAGACGAACATCGTCATCGTCGGCGAG GGGATGGGGGAGACGGTCATCACCGGCAGCCGGAGCATGGCCGCCGGCTGGACCACCTTC CGGAGCGCCACGTTTGCGGTGTCGGGGGCGGGGTTCATCGCACGGGACATGACGATTCGG AACACGGCGGGGCCGGCGGCGCACCAGGCGGTGGCGCTGCGCGTCGACTCCGATCGCTCC GCCTTCTTCCGCATCGCCGTCGAGGGCCACCAGGACACGCTCTACGCGCACTCCCTCCGC CAGTTCTACCGCGACTGCCGCGTCTCCGGCACCGTCGACTTCATCTTCGGCAACGGCATC GCCGTCATCCAGCGCACCACCATCTCTACCCTCCCGCCCGCCGCCGGCCAGAACGCCGGC AGCGTCACGGCGCAGGGCCGGAGGGACCCCAACCAGAACACCGGCTTCGCCCTCCATGCT TGCATCGTGGAGGCCAAGTACCCGACCTACCTCGGACGCCCGTGGAAGCCCTTCTCCCGG GTGGTCGTCATGGAGTCCTACCTCGGCGCAGGTGTCCAGCCGCGCGGATGGCTGGAGTGG GACGGCGACGGCGGCGAGCTCGCCACGCTATTCTACGGGGAGTACCGCAACTATGGGCCT GGCGCCAACATCGGCGGCCGGGTGCGGTGGCCCGGATACCACGTGATCATGGACGCCGCC GTCGCTGTGCGCTTCACCGTGCGGCGGTTCATCGACGGCCTCGCTTGGCTACCCTCCACC GGCGTCACCTTCACCGCTGACCTCAACAGGAAATGACGACGTATACACGGATGCAGATGC TCTGAT