Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0254100-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:8422323:8430151:-1 gene:Os01g0254100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TOPLESS-RELATED PROTEIN 1 description:Similar to CTV.2. (Os01t0254100-01);Similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like. (Os01t0254100-02)
Sequence	ATGTCGTCGCTCAGCCGGGAGCTCGTGTTCCTCATCCTCCAGTTCCTCGACGAGGAGAAG TTCAAGGAGACCGTGCACAAGCTTGAGCAAGAGTCAGGATTCTTCTTCAACATGAAGTAC TTTGAAGAGAAGGTCCATGCTGGGGAGTGGGATGAAGTGGAGAAATATCTTTCAGGTTTC ACCAAGGTGGATGACAATAGGTATTCTATGAAGATATTCTTTGAGATCAGAAAGCAGAAG TATTTGGAAGCACTTGACAGGCATGATAGAGCAAAGGCAGTAGATATTCTTGTTAAAGAT CTTAAAGTCTTCTCGACATTCAACGAGGAGTTATATAAAGAGATAACACAGCTTCTAACT CTTGAGAATTTCAGGGAAAATGAACAGCTGTCTAAGTACGGGGATACCAAATCTGCTCGC AGTATAATGCTGATTGAGCTCAAAAAACTTATTGAAGCGAACCCCCTTTTCCGGGAAAAG CTTGTTTTCCCAACTCTCAAGGCATCACGCCTTCGGACTTTAATCAACCAAAGCTTGAAC TGGCAGCATCAGCTTTGTAAGAATCCTCGGCCAAATCCAGATATCAAGACTTTGTTCACT GATCATACCTGCACTCCGCCAAATGGAGCTCGTGCTTCACCAGTTTCTGTACCACTGGCA GCGGTTCCAAAGGCCGGTGGCACATACCCACCACTTACAGCTCATACTCCATTTCAACCT CCTCCTGCTGGTCCATCTTTAGCGGGTTGGATGGCAAATGCTGCTGCTGCTACATCATCT GTTCCATCTGCTGTTGTGGCGGCATCATCACTACCTGTTCCGCCAAATCAAGACTATCAA AGTGCAGAATCTGAGCAACTAATGAAGCGATTGAGGCCAAGTGGACATGGTGTTGATGAG GCCACCTATCCTGCACCAATTCCCCAACCTTTATGGTCAGTGGAGGATCTTCCCAGGACA GTAGCTTGTACATTGTCACAGGGATCTAGTGTAACCAGCATGGATTTTCATCCAACTCGG CATACACTATTACTAGTTGGATCTACCAATGGTGAAATTACACTTTGGGAGGTTGGTATG CGTGAGAGACTGTTTTCAAAGCCCTTCAAAATTTGGGACATTCAAGCTTGTTCACCACAA TTTCAGAGTGTGGCTAAAGAGTCTTCCATATCCATTAACCGGGTTACCTGGAGTCCTGAT GGAGACTTGATAGGTGTCGCATTTGCAAAACATTTGATTCATCTGCATGCATATCAGCAA CCAAATGAGACGCGGCAAGTTCTAGAGATTGACGCTCATTCTGGAGCAGTTAATGACATA GCATTCTCCCGGCCAAATAAGCAACTTTGTGTTGTCACTTGTGGAGATGATAGGCTGATA AAGGTCTGGGATATGCATGGACAGAAACTGTTTTCATTTGAAGGGCATGAGGCACCAGTG TATTCCATCTGCCCTCACCACAAAGAGAGTATTCAGTTTATCTTCTCAACCTCCCTCGAC GGGAAAATTAAGGCATGGCTTTATGATCATATGGGATCCAGGGTAGATTATGATGCTCCA GGAAAATGGTGTACTACTATGCTTTATAGCGCTGATGGAACTAGGTTGTTCTCATGTGGA ACAAGTAAAGATGGAGATTCATATTTAGTTGAGTGGAATGAAAGTGAAGGATCTATCAAG AGGACATATTCTGGGTTTCGTAAAAAGTCAGCTGGTGTTGGTGTGGTGCAGTTTGACACA GCTCAGAATCACATTTTGGCTGCTGGTGAAGATAATCAGATTAAGTTCTGGGATGTTGAT AATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGGGTCTTCCACGGTTG AGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTACAGTGGACAATGGGTTTAAGATA CTTGCAAATGCTGATGGACTCAGAACTTTACGAGCATTTGGAAACCGACCTTTCGAAGCA TTTAGATCGCAATATGAAGCTTCTTCTATGAAGGTCTCTGGTGCTCCTGTTGTTGCGGGC ATTTCTCCTAATATTGGTCGGATGGATCACATCGACAGGAATTCTCCTGCAAAGCCATCT CCTATAATGAATGGTGGTGATCCAGCATCTAGAAGCATCGATATAAAGCCTAGAATTTCA GAAGAAAGGCCCGATAAAGCAAAACCCTGGGAGCTGATGGAAGTCCTAAATGCTCAGCAA TGCCGTGTAGCTACAATGCCAGAAACTCCAGACCAAGCCAGCAAGGTTGTCAGACTTCTG TACACAAATTCTGGTGTTGGCTTGCTAGCACTTGGTTCCAATGCCATTCAAAGGCTGTGG AAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGGCCACAGCCAATGTAGTGCCACAA CATTGGCAACCAAACAGTGGTCTTGTCATGCAAAATGATACAGCAGATACCAATCCTGAG GATGCAGTTCCATGCATTGCTCTCTCCAAGAATGATTCTTATGTGATGTCTGCATGTGGT GGGAAGGTTTCACTGTTTAACATGATGACATTTAAGGTGATGACAACATTCATGCCACCA CCTCCAGCATCAACCTTTTTAGCATTTCACCCTCAAGACAATAATATCATAGCAATTGGA ATGGAAGATTCAACCATCCATATATACAATGTCAGGGTAGATGAGGTCAAAACTAGATTG AAAGGGCATCAAAGGAGGATAACTGGTTTGGCCTTCTCAAACAACCTACAAATACTTGTG TCTTCAGGGGCTGATGCACAGCTTTGTGTGTGGGCCACCGATACTTGGGAAAAGAAAAAA TCTGTTGCTATTCAAATGCCAGCTGGGAAAACTCCATCAGGGGATACTTGGGTCCAGTTT AACTCTGACTGGAGTCGTTTGTTAGTAGTACATGAGACTCAGCTAGCTATATATGATGCA TCAAAAATGGAAAGAATCTACCAGTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCA CATGCATCATACTCACGCAACAGCCAGTTGGTTTTTGCTGCCTTTACCGATGGTAACATA GGAATTTTTGATGTGGAGAACTTGAGATT

Peptide Sequence

PEP ID	Os01t0254100-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:8422323:8430151:-1 gene:Os01g0254100 transcript:Os01t0254100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TOPLESS-RELATED PROTEIN 1 description:Similar to CTV.2. (Os01t0254100-01);Similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like. (Os01t0254100-02)
Sequence	MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT LENFRENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLN WQHQLCKNPRPNPDIKTLFTDHTCTPPNGARASPVSVPLAAVPKAGGTYPPLTAHTPFQP PPAGPSLAGWMANAAAATSSVPSAVVAASSLPVPPNQDYQSAESEQLMKRLRPSGHGVDE ATYPAPIPQPLWSVEDLPRTVACTLSQGSSVTSMDFHPTRHTLLLVGSTNGEITLWEVGM RERLFSKPFKIWDIQACSPQFQSVAKESSISINRVTWSPDGDLIGVAFAKHLIHLHAYQQ PNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCGDDRLIKVWDMHGQKLFSFEGHEAPV YSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLYSADGTRLFSCG TSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAGEDNQIKFWDVD NTTMLSSTEADGGLPGLPRLRFNKEGNLLAVTTVDNGFKILANADGLRTLRAFGNRPFEA FRSQYEASSMKVSGAPVVAGISPNIGRMDHIDRNSPAKPSPIMNGGDPASRSIDIKPRIS EERPDKAKPWELMEVLNAQQCRVATMPETPDQASKVVRLLYTNSGVGLLALGSNAIQRLW KWARNDQNPSGKATANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALSKNDSYVMSACG GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKTRL KGHQRRITGLAFSNNLQILVSSGADAQLCVWATDTWEKKKSVAIQMPAGKTPSGDTWVQF NSDWSRLLVVHETQLAIYDASKMERIYQWIPQDALSAPISHASYSRNSQLVFAAFTDGNI GIFDVENLR

Transcript Sequence

Transcript ID	Os01t0254100-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:8422323:8430151:-1 gene:Os01g0254100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TOPLESS-RELATED PROTEIN 1 description:Similar to CTV.2. (Os01t0254100-01);Similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like. (Os01t0254100-02)
Sequence	CATCTCCGTCTCTCTCTCTCTCATCACGAGGGGAGGCGGCGGCGGCGACGGGGAAACCCT AGAATTCGGCGGGGTGAAGCGGTGAAGGCGCCCGCGGCAGATCGGAGCCGGGAGGGGGGT TTCAGCGGCGGCGGGGGGGCGGCGCCATGTCGTCGCTCAGCCGGGAGCTCGTGTTCCTCA TCCTCCAGTTCCTCGACGAGGAGAAGTTCAAGGAGACCGTGCACAAGCTTGAGCAAGAGT CAGGATTCTTCTTCAACATGAAGTACTTTGAAGAGAAGGTCCATGCTGGGGAGTGGGATG AAGTGGAGAAATATCTTTCAGGTTTCACCAAGGTGGATGACAATAGGTATTCTATGAAGA TATTCTTTGAGATCAGAAAGCAGAAGTATTTGGAAGCACTTGACAGGCATGATAGAGCAA AGGCAGTAGATATTCTTGTTAAAGATCTTAAAGTCTTCTCGACATTCAACGAGGAGTTAT ATAAAGAGATAACACAGCTTCTAACTCTTGAGAATTTCAGGGAAAATGAACAGCTGTCTA AGTACGGGGATACCAAATCTGCTCGCAGTATAATGCTGATTGAGCTCAAAAAACTTATTG AAGCGAACCCCCTTTTCCGGGAAAAGCTTGTTTTCCCAACTCTCAAGGCATCACGCCTTC GGACTTTAATCAACCAAAGCTTGAACTGGCAGCATCAGCTTTGTAAGAATCCTCGGCCAA ATCCAGATATCAAGACTTTGTTCACTGATCATACCTGCACTCCGCCAAATGGAGCTCGTG CTTCACCAGTTTCTGTACCACTGGCAGCGGTTCCAAAGGCCGGTGGCACATACCCACCAC TTACAGCTCATACTCCATTTCAACCTCCTCCTGCTGGTCCATCTTTAGCGGGTTGGATGG CAAATGCTGCTGCTGCTACATCATCTGTTCCATCTGCTGTTGTGGCGGCATCATCACTAC CTGTTCCGCCAAATCAAGACTATCAAAGTGCAGAATCTGAGCAACTAATGAAGCGATTGA GGCCAAGTGGACATGGTGTTGATGAGGCCACCTATCCTGCACCAATTCCCCAACCTTTAT GGTCAGTGGAGGATCTTCCCAGGACAGTAGCTTGTACATTGTCACAGGGATCTAGTGTAA CCAGCATGGATTTTCATCCAACTCGGCATACACTATTACTAGTTGGATCTACCAATGGTG AAATTACACTTTGGGAGGTTGGTATGCGTGAGAGACTGTTTTCAAAGCCCTTCAAAATTT GGGACATTCAAGCTTGTTCACCACAATTTCAGAGTGTGGCTAAAGAGTCTTCCATATCCA TTAACCGGGTTACCTGGAGTCCTGATGGAGACTTGATAGGTGTCGCATTTGCAAAACATT TGATTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAGATTGACG CTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAATAAGCAACTTTGTGTTG TCACTTGTGGAGATGATAGGCTGATAAAGGTCTGGGATATGCATGGACAGAAACTGTTTT CATTTGAAGGGCATGAGGCACCAGTGTATTCCATCTGCCCTCACCACAAAGAGAGTATTC AGTTTATCTTCTCAACCTCCCTCGACGGGAAAATTAAGGCATGGCTTTATGATCATATGG GATCCAGGGTAGATTATGATGCTCCAGGAAAATGGTGTACTACTATGCTTTATAGCGCTG ATGGAACTAGGTTGTTCTCATGTGGAACAAGTAAAGATGGAGATTCATATTTAGTTGAGT GGAATGAAAGTGAAGGATCTATCAAGAGGACATATTCTGGGTTTCGTAAAAAGTCAGCTG GTGTTGGTGTGGTGCAGTTTGACACAGCTCAGAATCACATTTTGGCTGCTGGTGAAGATA ATCAGATTAAGTTCTGGGATGTTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACG GAGGCTTACCGGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTA CTACAGTGGACAATGGGTTTAAGATACTTGCAAATGCTGATGGACTCAGAACTTTACGAG CATTTGGAAACCGACCTTTCGAAGCATTTAGATCGCAATATGAAGCTTCTTCTATGAAGG TCTCTGGTGCTCCTGTTGTTGCGGGCATTTCTCCTAATATTGGTCGGATGGATCACATCG ACAGGAATTCTCCTGCAAAGCCATCTCCTATAATGAATGGTGGTGATCCAGCATCTAGAA GCATCGATATAAAGCCTAGAATTTCAGAAGAAAGGCCCGATAAAGCAAAACCCTGGGAGC TGATGGAAGTCCTAAATGCTCAGCAATGCCGTGTAGCTACAATGCCAGAAACTCCAGACC AAGCCAGCAAGGTTGTCAGACTTCTGTACACAAATTCTGGTGTTGGCTTGCTAGCACTTG GTTCCAATGCCATTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGA AGGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTCATGCAAA ATGATACAGCAGATACCAATCCTGAGGATGCAGTTCCATGCATTGCTCTCTCCAAGAATG ATTCTTATGTGATGTCTGCATGTGGTGGGAAGGTTTCACTGTTTAACATGATGACATTTA AGGTGATGACAACATTCATGCCACCACCTCCAGCATCAACCTTTTTAGCATTTCACCCTC AAGACAATAATATCATAGCAATTGGAATGGAAGATTCAACCATCCATATATACAATGTCA GGGTAGATGAGGTCAAAACTAGATTGAAAGGGCATCAAAGGAGGATAACTGGTTTGGCCT TCTCAAACAACCTACAAATACTTGTGTCTTCAGGGGCTGATGCACAGCTTTGTGTGTGGG CCACCGATACTTGGGAAAAGAAAAAATCTGTTGCTATTCAAATGCCAGCTGGGAAAACTC CATCAGGGGATACTTGGGTCCAGTTTAACTCTGACTGGAGTCGTTTGTTAGTAGTACATG AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGTGGATACCTC AGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCACGCAACAGCCAGTTGGTTT TTGCTGCCTTTACCGATGGTAACATAGGAATTTTTGATGTGGAGAACTTGAGATT