Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0253200-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:8380048:8380745:1 gene:Os01g0253200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to pectinesterase inhibitor domain containing protein. (Os01t0253200-00)
Sequence

ATGGCGAGATCACTGGCGCACGCGACGCTGCTCCTCGTCGTTGCCGTCGTGGCGGCGGCG
GCCTGCTGGACCACGGCGGCCGGCGAGAACGAGGAGGTGGCGGAGATATGCAAGAAGACG
TCGTACCCGGAGGTGTGCATTGCCACAGCGGGGAAGCAGGCGTCCAAGTACGGCGCCGCC
GTGGACCCGCTGGCGGTGCTCAACATGCAGGTGGACGCGTTCGCGCTGCGCACGGAGGCG
GCGCGGAAGCACCTGACGGAGGCGGTGAAGACGGCGACGCCGAAGGCGGCGAAGGCGCTG
GACCTGTGCGACAGCCTGTACCTGGACGTCGAGGACAACCTCGGCGCGGCGCGGCGCGCC
ATCGGGTTCAAGGACGCCGTCACCATCCGCGCCATGATGGGCATGGCGGCGCAGGACATG
CAGGGCTGCGACGAGCAGTTCAGGAAGGTCGGCGAGAAGAACCCCATGGACCACTTCAAC
CGGTCCCTCCTCGAGATGTCCGAGATCTGCCGCTCCCTCTCCAACATGATCTGA

Peptide Sequence

PEP ID

Os01t0253200-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:8380048:8380745:1 gene:Os01g0253200 transcript:Os01t0253200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to pectinesterase inhibitor domain containing protein. (Os01t0253200-00)
Sequence

MARSLAHATLLLVVAVVAAAACWTTAAGENEEVAEICKKTSYPEVCIATAGKQASKYGAA
VDPLAVLNMQVDAFALRTEAARKHLTEAVKTATPKAAKALDLCDSLYLDVEDNLGAARRA
IGFKDAVTIRAMMGMAAQDMQGCDEQFRKVGEKNPMDHFNRSLLEMSEICRSLSNMI

Transcript Sequence

Transcript ID

Os01t0253200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:8380048:8380745:1 gene:Os01g0253200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to pectinesterase inhibitor domain containing protein. (Os01t0253200-00)
Sequence

CAGACATGGCGAGATCACTGGCGCACGCGACGCTGCTCCTCGTCGTTGCCGTCGTGGCGG
CGGCGGCCTGCTGGACCACGGCGGCCGGCGAGAACGAGGAGGTGGCGGAGATATGCAAGA
AGACGTCGTACCCGGAGGTGTGCATTGCCACAGCGGGGAAGCAGGCGTCCAAGTACGGCG
CCGCCGTGGACCCGCTGGCGGTGCTCAACATGCAGGTGGACGCGTTCGCGCTGCGCACGG
AGGCGGCGCGGAAGCACCTGACGGAGGCGGTGAAGACGGCGACGCCGAAGGCGGCGAAGG
CGCTGGACCTGTGCGACAGCCTGTACCTGGACGTCGAGGACAACCTCGGCGCGGCGCGGC
GCGCCATCGGGTTCAAGGACGCCGTCACCATCCGCGCCATGATGGGCATGGCGGCGCAGG
ACATGCAGGGCTGCGACGAGCAGTTCAGGAAGGTCGGCGAGAAGAACCCCATGGACCACT
TCAACCGGTCCCTCCTCGAGATGTCCGAGATCTGCCGCTCCCTCTCCAACATGATCTGAT
CGATCGCTCTCGCCGCCCGCCACCGTGCCGGCGCGCGCACCGCGCACGCGTGCCGCCGGC
CGGCGACCCTTTGCGTGAGAGCGAGCAAGCGCGCTCCAGCAGCGCTGGTGATTGAAGCTT
CTCTTTTTAATTTGTTTTCTTTCGCTTCTTTTTTTTTA