Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0249800-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:8233016:8233871:1 gene:Os01g0249800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal-associated domain, HMA domain containing protein. (Os01t0249800-00)
Sequence

CTGGCCGTACTGATCGGTTTTAGTTTTCATGAATCATTTGTCCCGTGTGATTTGATCGTT
GTAAATTTCTTGCAGAAAACTGTTATCAAAGCTGACCTCATTGGCAGAGCATGCAAGAGT
GAGATTTTGGCGATTGTTGCCACGATCAAGGGGATCAAGTCCATGGACATTGATGCGGAG
AAGTGCACGCTGACGGTGGTCGGGATCGTCGACCCGGTGCGCATCGTGCGCAAGCTGAGG
AAGAAGTGCTTCTCCGCGTGCATCGTCTCTGTGGAGGACGACAAGCCCAAGGAGGAGGAG
AAGAAGGACCCCTGCAAGGAGGCCAAGGAGAAATTGGAGAAGGCTTGGAAGGAGTACTGC
GAGAAGTGCAACGTCAAGCTCAAGCCAGGCTGCCCCTGCTCCTGCTCTACCCCCTGCTCG
TTCCCTCCCATCGGCTGCCACGACCGCGGCATTTGCCCACCACCTTGCCCGCCACCTTGC
CCGCTACCTTGCCCACCACCTTGCCCACTACCTTGCCCACCACCTTGCCCGCCACGGGGG
TATGGCTATGGCTGCTACTATGAGGAGAGATATCCCGGGGGAGAATGTGTCATCCAGTAA

Peptide Sequence

PEP ID

Os01t0249800-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:8233016:8233871:1 gene:Os01g0249800 transcript:Os01t0249800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal-associated domain, HMA domain containing protein. (Os01t0249800-00)
Sequence

LAVLIGFSFHESFVPCDLIVVNFLQKTVIKADLIGRACKSEILAIVATIKGIKSMDIDAE
KCTLTVVGIVDPVRIVRKLRKKCFSACIVSVEDDKPKEEEKKDPCKEAKEKLEKAWKEYC
EKCNVKLKPGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPPPCPPRG
YGYGCYYEERYPGGECVIQ

Transcript Sequence

Transcript ID

Os01t0249800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:8233016:8233871:1 gene:Os01g0249800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal-associated domain, HMA domain containing protein. (Os01t0249800-00)
Sequence

CTGGCCGTACTGATCGGTTTTAGTTTTCATGAATCATTTGTCCCGTGTGATTTGATCGTT
GTAAATTTCTTGCAGAAAACTGTTATCAAAGCTGACCTCATTGGCAGAGCATGCAAGAGT
GAGATTTTGGCGATTGTTGCCACGATCAAGGGGATCAAGTCCATGGACATTGATGCGGAG
AAGTGCACGCTGACGGTGGTCGGGATCGTCGACCCGGTGCGCATCGTGCGCAAGCTGAGG
AAGAAGTGCTTCTCCGCGTGCATCGTCTCTGTGGAGGACGACAAGCCCAAGGAGGAGGAG
AAGAAGGACCCCTGCAAGGAGGCCAAGGAGAAATTGGAGAAGGCTTGGAAGGAGTACTGC
GAGAAGTGCAACGTCAAGCTCAAGCCAGGCTGCCCCTGCTCCTGCTCTACCCCCTGCTCG
TTCCCTCCCATCGGCTGCCACGACCGCGGCATTTGCCCACCACCTTGCCCGCCACCTTGC
CCGCTACCTTGCCCACCACCTTGCCCACTACCTTGCCCACCACCTTGCCCGCCACGGGGG
TATGGCTATGGCTGCTACTATGAGGAGAGATATCCCGGGGGAGAATGTGTCATCCAGTAA