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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0248900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:8196083:8197096:-1 gene:Os01g0248900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 8 description:Alpha-expansin, Mediation of the cell extension and growth, Root system architecture (Os01t0248900-01)
Sequence

ATGGCGGCCGCCAGAATGCTCGTGCTCCTGGCCTCTCTCTGCGCTCTCCTGCTCACGGCG
TCCGCGGCCAAATGGACTCCTGCCTTCGCGACGTTCTACGGCGGCAGCGACGCCTCCGGC
ACCATGGGCGGCGCATGCGGGTACGGCGACCTGTACGGCGCCGGGTACGGGACGCGGACG
GCGGCGCTGAGCACGGCGCTGTTCAACGGCGGCGCGTCGTGCGGCGCCTGCTTCACCATC
GCCTGCGACACCCGCAAGACGCAGTGGTGCAAGCCGGGGACGTCCATCACCGTGACGGCG
ACCAACTTCTGCCCTCCAAACTACGCCCTGTCCGGCGACGCCGGCGGGTGGTGCAACCCG
CCGCGCCGCCACTTCGACATGTCGCAGCCGGCGTGGGAGACGATCGCGGTGTACCGCGCC
GGGATCGTGCCCGTGAACTACCGCCGCGTGCCGTGCCAGCGGAGCGGCGGCATCCGGTTC
GCCGTGAACGGGCACAGCTACTTCGAGCTGGTGCTGGTGACGAACGTCGGCGGCAGCGGC
GCGGTGGCGCAGATGTGGATCAAGGGGTCCGGGACGGGGTGGATGGCGATGAGCCGCAAC
TGGGGCGCGAACTGGCAGAGCAACGCGCGCCTCGACGGGCAGGCGCTGTCGTTCCGGGTG
CAGGCCGACGACGGCCGCGTCGTCACGGCGGCCGACGTCGCGCCGGCGGGGTGGTCGTTC
GGCGCCACCTACACCTCCTCGGCTCAGTTCTACTGA

Peptide Sequence

PEP ID

Os01t0248900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:8196083:8197096:-1 gene:Os01g0248900 transcript:Os01t0248900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 8 description:Alpha-expansin, Mediation of the cell extension and growth, Root system architecture (Os01t0248900-01)
Sequence

MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRT
AALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNP
PRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSG
AVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSF
GATYTSSAQFY

Transcript Sequence

Transcript ID

Os01t0248900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:8196083:8197096:-1 gene:Os01g0248900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 8 description:Alpha-expansin, Mediation of the cell extension and growth, Root system architecture (Os01t0248900-01)
Sequence

GACGCGACAATGGCGGCCGCCAGAATGCTCGTGCTCCTGGCCTCTCTCTGCGCTCTCCTG
CTCACGGCGTCCGCGGCCAAATGGACTCCTGCCTTCGCGACGTTCTACGGCGGCAGCGAC
GCCTCCGGCACCATGGGCGGCGCATGCGGGTACGGCGACCTGTACGGCGCCGGGTACGGG
ACGCGGACGGCGGCGCTGAGCACGGCGCTGTTCAACGGCGGCGCGTCGTGCGGCGCCTGC
TTCACCATCGCCTGCGACACCCGCAAGACGCAGTGGTGCAAGCCGGGGACGTCCATCACC
GTGACGGCGACCAACTTCTGCCCTCCAAACTACGCCCTGTCCGGCGACGCCGGCGGGTGG
TGCAACCCGCCGCGCCGCCACTTCGACATGTCGCAGCCGGCGTGGGAGACGATCGCGGTG
TACCGCGCCGGGATCGTGCCCGTGAACTACCGCCGCGTGCCGTGCCAGCGGAGCGGCGGC
ATCCGGTTCGCCGTGAACGGGCACAGCTACTTCGAGCTGGTGCTGGTGACGAACGTCGGC
GGCAGCGGCGCGGTGGCGCAGATGTGGATCAAGGGGTCCGGGACGGGGTGGATGGCGATG
AGCCGCAACTGGGGCGCGAACTGGCAGAGCAACGCGCGCCTCGACGGGCAGGCGCTGTCG
TTCCGGGTGCAGGCCGACGACGGCCGCGTCGTCACGGCGGCCGACGTCGCGCCGGCGGGG
TGGTCGTTCGGCGCCACCTACACCTCCTCGGCTCAGTTCTACTGATGAGCATTAATTGCA
AGCCTATCTCATTTAATTAATCTGGACCGTTCGATGTAGTATATTGTATGCTTTGATCGA
CGTGGCATAGGATGGAAGAGGCCGCCCACGAAGAAAATTTGGGACTTGTGTAT