Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0248600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:8179040:8183108:-1 gene:Os01g0248600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PARTNER OF SLD FIVE 2 description:GINS complex, Psf2 component family protein. (Os01t0248600-01)
Sequence

ATGGCTGGGCAGTCTGACCCTCATCTTTCTATCTTCTCACCCTCAGAGGTGGAGTTCGTG
GCGGAGGATGAGATTGTCGAGATCGTCCCTAACATTCGCATGGAGGCCCTCAACATGATA
TGCGGGGATTTTGGGCCCTTCTTCCCGCAAATTGCAAGCAAAGTGCCTCTTTGGCTCGCG
GTTGCACTCAAGAAGCGTGGCAAATGTACCATACGCACACCTGACTGGATGACTGTTGAC
CGCTTGACGCAGGTATTAGATGCAGAAAGAGAGTCACCCAAAGAATTTCAGCCATTGCCG
TTCCACTATATTGAAATATCTAAGCTTCTCTTTGATCATGCTCGTGATGACATCTCAGAT
GCATACCTGGTAAGATCTTTGATTGAGGACATCCGAGATGTCAGATTCCATAAGGTTGAG
ACTGGTCTGGAGACAATATCTGGCCGTACTCATGCTGTAAAGCTAAAAAATCTCTCTGCA
ATGGAAGTGAATATCGTGCGTCCTTTCATGGTGAGAACTTTACAAGCATTCTATAAGCAT
GATAGCCCACAGATGATTCAGCAGGCAGATAACACAGGTAGCAGACCAACACCAGTTACA
GACCGTGGTCCAAGAAGAGATCTAAGGCGCAGGTAA

Peptide Sequence

PEP ID

Os01t0248600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:8179040:8183108:-1 gene:Os01g0248600 transcript:Os01t0248600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PARTNER OF SLD FIVE 2 description:GINS complex, Psf2 component family protein. (Os01t0248600-01)
Sequence

MAGQSDPHLSIFSPSEVEFVAEDEIVEIVPNIRMEALNMICGDFGPFFPQIASKVPLWLA
VALKKRGKCTIRTPDWMTVDRLTQVLDAERESPKEFQPLPFHYIEISKLLFDHARDDISD
AYLVRSLIEDIRDVRFHKVETGLETISGRTHAVKLKNLSAMEVNIVRPFMVRTLQAFYKH
DSPQMIQQADNTGSRPTPVTDRGPRRDLRRR

Transcript Sequence

Transcript ID

Os01t0248600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:8179040:8183108:-1 gene:Os01g0248600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PARTNER OF SLD FIVE 2 description:GINS complex, Psf2 component family protein. (Os01t0248600-01)
Sequence

AAGCAGGCGGCAGCTAGGGTTGGAGTCGCCGCTGTTCCTCCCCTCGCCTCGCAGCCTCCG
CCTCTCCTCGTCTTTCCGGCTCAATCTGCGGAGAGGGTGGAGGCGCGCGCGGGCCACTGC
CACCGTGAGGCAGCCGCACTCGGGCACCGGGACCTCGGGAACCCTAGCCGGCTGGCCCCG
GTTTATTGCCTGCCCCTTCTGGCTGCTAGCGGCCGGGCTGCTTGACGATTTGTGGGTTTC
CCTTTCCCATTTGCTCAGACACTAAATCATCAAATAGAGGAAGCAATTTAGTGCCACGGT
GGTCAAGATGGCTGGGCAGTCTGACCCTCATCTTTCTATCTTCTCACCCTCAGAGGTGGA
GTTCGTGGCGGAGGATGAGATTGTCGAGATCGTCCCTAACATTCGCATGGAGGCCCTCAA
CATGATATGCGGGGATTTTGGGCCCTTCTTCCCGCAAATTGCAAGCAAAGTGCCTCTTTG
GCTCGCGGTTGCACTCAAGAAGCGTGGCAAATGTACCATACGCACACCTGACTGGATGAC
TGTTGACCGCTTGACGCAGGTATTAGATGCAGAAAGAGAGTCACCCAAAGAATTTCAGCC
ATTGCCGTTCCACTATATTGAAATATCTAAGCTTCTCTTTGATCATGCTCGTGATGACAT
CTCAGATGCATACCTGGTAAGATCTTTGATTGAGGACATCCGAGATGTCAGATTCCATAA
GGTTGAGACTGGTCTGGAGACAATATCTGGCCGTACTCATGCTGTAAAGCTAAAAAATCT
CTCTGCAATGGAAGTGAATATCGTGCGTCCTTTCATGGTGAGAACTTTACAAGCATTCTA
TAAGCATGATAGCCCACAGATGATTCAGCAGGCAGATAACACAGGTAGCAGACCAACACC
AGTTACAGACCGTGGTCCAAGAAGAGATCTAAGGCGCAGGTAACAAGCAGGATGTGTATC
TATCCCTTGAAAATTTTACTGTGTGTAGATTGCAGTAAATGAAGGTACTTGTGATCTGTA
TCTCACTAGCTAGAAGCCAACTGCGTTTCCCCAATTTGTTGTGTGTGTACCAAAATTTTA
TAGGACTAATAACATTTGACATGGTTTTGTTTTTGAAGAAGCGAAGATAGTAAGATACAT
CAATTATCTGTCACAAAAGGGAGATTCCTCATGTATTCTGGATGGATGTAACTTATGTGA
TGTATTTTTACTATTTCTGGC