Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0248500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:8175587:8177889:-1 gene:Os01g0248500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pathogen-related protein. (Os01t0248500-01)
Sequence

ATGGCGGCTGCTGGTGAAGCTTCAGGAGGCAGGGACAAGTACCGGTCGTTCATGTACGGC
GAGGGAGAGAAGGACACCGTGTGGAGGCTTGGATCCCCTCCAAACTACGACGTCGTCAAC
AAGCTCTTCGAGGAAGAGAGAACCAAGGAATGGCCAGAGGGGTCTCTGGAGGAGAAGGTC
CAGAGGTTGCTGAAGACCTGGGAGATGGAGCTCATCCACAAGGTGCGACCCGAGGACCAG
AAGAGCGTCCACTCGCAGAAATTCTGCGCGAGCACCAACGGGATGAGATTTCTGAGCCGG
AAGGAGGTGATGGCTATCGGCGGCTACAACGCGTTCCTGCAGACGAAACTGCCGCCGGAG
CACCGCATCTATGACCCGGACAATGAGACGCTGGAGTCCGGCATGGCCACGTTCTTGACG
GCGTTCCCGCGTGGCTTTGCCATCGAGGTGCTCGACGTCTACAGTGGTCCACCACGGATC
GTCTTCAAGTTCCGACACTGGGGGTACATGGAGGGGCCCTTCAAGGAGCATCCCCCCCAT
GGCAAGCGGGTCGAGTTCTTTGGCATCTGCATCTTCCATGTCGACGAGGAGATGAAGGTG
GAGAAGACGGAGTACTTCTACGAGCGCGGCAATTTCCTCGCGAGCTTCTTGAGCACGCCT
GCTGCTGCTGCTGCTGCTGAGGCTGCGTCAGGCTCAGGATGCCCTGTCATGGGAGGAAAC
TGA

Peptide Sequence

PEP ID

Os01t0248500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:8175587:8177889:-1 gene:Os01g0248500 transcript:Os01t0248500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pathogen-related protein. (Os01t0248500-01)
Sequence

MAAAGEASGGRDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKV
QRLLKTWEMELIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPE
HRIYDPDNETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPH
GKRVEFFGICIFHVDEEMKVEKTEYFYERGNFLASFLSTPAAAAAAEAASGSGCPVMGGN

Transcript Sequence

Transcript ID

Os01t0248500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:8175587:8177889:-1 gene:Os01g0248500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pathogen-related protein. (Os01t0248500-01)
Sequence

ATCGACAGCCGAAAGGTCTTGCACCCAAAAGCGCACGTTCCTAAATCACGCGCCAACTGC
TCGAACACAAACTAGGAAGAAGGGACCAAGCAACAATTTGTTTATTCCATCTGATGACTG
CCTCTCCTATATCTAAGGAGAGCTAGCTGTTCATCAGCTGAGACTCCCATCATCTCGCAA
AACTACAAGCAGCTCACCTCGCAAATTAACTGTCGGCCATGGCGGCTGCTGGTGAAGCTT
CAGGAGGCAGGGACAAGTACCGGTCGTTCATGTACGGCGAGGGAGAGAAGGACACCGTGT
GGAGGCTTGGATCCCCTCCAAACTACGACGTCGTCAACAAGCTCTTCGAGGAAGAGAGAA
CCAAGGAATGGCCAGAGGGGTCTCTGGAGGAGAAGGTCCAGAGGTTGCTGAAGACCTGGG
AGATGGAGCTCATCCACAAGGTGCGACCCGAGGACCAGAAGAGCGTCCACTCGCAGAAAT
TCTGCGCGAGCACCAACGGGATGAGATTTCTGAGCCGGAAGGAGGTGATGGCTATCGGCG
GCTACAACGCGTTCCTGCAGACGAAACTGCCGCCGGAGCACCGCATCTATGACCCGGACA
ATGAGACGCTGGAGTCCGGCATGGCCACGTTCTTGACGGCGTTCCCGCGTGGCTTTGCCA
TCGAGGTGCTCGACGTCTACAGTGGTCCACCACGGATCGTCTTCAAGTTCCGACACTGGG
GGTACATGGAGGGGCCCTTCAAGGAGCATCCCCCCCATGGCAAGCGGGTCGAGTTCTTTG
GCATCTGCATCTTCCATGTCGACGAGGAGATGAAGGTGGAGAAGACGGAGTACTTCTACG
AGCGCGGCAATTTCCTCGCGAGCTTCTTGAGCACGCCTGCTGCTGCTGCTGCTGCTGAGG
CTGCGTCAGGCTCAGGATGCCCTGTCATGGGAGGAAACTGAAGCAATGGGTAACCAACAC
AGCATGTCACCCATTCAAATGTCCTACTCCAGATTACCAACAGATCTGCACCTGCTTTTT
TATTCCAAGCTATATACTGTAGTAAATAAACAGTCTTGTTTGTATGGTACAAAGCACAAA
CACCACTTGTGGTGGGTACCTTTAGGATAGTTCTACTTGCTCTTTTGGCATAGAAGAACT
AAGCTACACGGCCATGATTTAATCATCAAAGTAGTTATAAGTAGAAGTCTGACGAATAAA
AGTTCAAACTTCTTATTTCGAGCAAAATATCCTCCTCCACCTCCATTGTTGTATGGAGTA
TGCATACAATCTTTACCAGATTTTATCAGAGCACCGTGGTTGATAGCTGCGC