Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0246500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:8064860:8069013:-1 gene:Os01g0246500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Minus dominance protein. (Os01t0246500-01)
Sequence

ATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAG
GAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCG
CAGCCGCAGAAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCG
CTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATT
TGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGT
GATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAAGTT
GCAAAACAGAAGGCTCTAAGCGCATCTGGTCTATCAACAGTATCACCAGGCGCTTTCCAA
GGAGTGGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAA
CAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCA
ACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATG
AAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAA
GCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGA
GCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCA
CAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAG
TCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAG
GTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGA

Peptide Sequence

PEP ID

Os01t0246500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:8064860:8069013:-1 gene:Os01g0246500 transcript:Os01t0246500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Minus dominance protein. (Os01t0246500-01)
Sequence

MCAAPMASTAQPQQQPQQQQEQQPVAAAAVPTPAPPASEAQPQKPTRVSLSYEEISKLFS
LPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLVSGKSGDDTKNAEREKAKGLLEISKV
AKQKALSASGLSTVSPGAFQGVAKSQQGSSKAGQVSPPGKQNVLGGSAILSYGTQTKGIP
TYMDDFKYGFPSSGLSLQTMKWWGTDSHTETTPAKDDNGEAPESANEASKGMTDDELDWG
ADEAEAEADADSAITTEPSAQLCSLRRKAVDDGRKLLTGKSCGGLELCRLNKRQKMALAQ
VFGASLPEQLRSKLG

Transcript Sequence

Transcript ID

Os01t0246500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:8064860:8069013:-1 gene:Os01g0246500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Minus dominance protein. (Os01t0246500-01)
Sequence

ATCCCCATCCCAAACCCCGCGCCGCCTCTTACCGCTTCGCGTCAGCTTCGATTTGATTCG
GTTCGGTTCGCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGC
TGTTATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCA
GCAGGAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGA
GGCGCAGCCGCAGAAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTT
CTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAG
GATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTC
TGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAA
AGTTGCAAAACAGAAGGCTCTAAGCGCATCTGGTCTATCAACAGTATCACCAGGCGCTTT
CCAAGGAGTGGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGG
AAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCAT
CCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAAC
TATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGG
TGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTG
GGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATC
TGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGG
CAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGC
CCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTG
CCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAG
CTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTT
GTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTC