Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0238900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:7679009:7685849:1 gene:Os01g0238900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-11 description:Similar to Protein SOF1. (Os01t0238900-01)
Sequence	ATGAGGGTGAAGGTGATATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGAC CTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAA TACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGATATTTGCTAGGCCATTTATTGGA GCAATGGATGGCCATGTTGATGCTGTATCATGCATGGCGAAAAACCCCAATTATTTGAAA GCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCTGTGGGACATTGCTGCAAGGAAG ACAGTCTGCCAGTTCCCTGGACATCAGGGTGCTGTGAGGGGTTTGGCGACATCTACTGAT GGTGATCTTCTAGTATCATGTGGTGTTGACTGCACTGTTCGACTATGGAAAGTCCCTATG CTCAAGATGGTAGACACTAACGATGCTATTGGAGATGCTTCTCAGCCATCAGCGGTCTAC ACCTGGAAGCATGCGTTTTGGGGTGTTGACCACCAGTGGGATGGCAATCTTTTTGCAACT GTAGGTGCTCAGGTTGATATATGGGATCAAAACAGGTCAGAGCCAATAAATAGCTTTGAA TGGGGTAAAGATACAGTTCTGTCCGTGAGATTTAATCCTGGAGAACCTGATGTTCTAATT ACATCAGCTAGTGATCGGAGTATAACACTTTATGATCTACGCATGTCATCCCCTGCTAGA AAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTGGAACCCTAGGGAGCCTATGAAC TTCACTGCCGTAAGATTTATTTGTTTCCTGTATATGGTGCTGACTGTCGAATGA

Peptide Sequence

PEP ID	Os01t0238900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:7679009:7685849:1 gene:Os01g0238900 transcript:Os01t0238900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-11 description:Similar to Protein SOF1. (Os01t0238900-01)
Sequence	MRVKVISRSTDEFTRERSQDLQKVFRNYDPALRSQEKAVEYTRALNAAKLEKIFARPFIG AMDGHVDAVSCMAKNPNYLKAIFSGSMDGDIRLWDIAARKTVCQFPGHQGAVRGLATSTD GDLLVSCGVDCTVRLWKVPMLKMVDTNDAIGDASQPSAVYTWKHAFWGVDHQWDGNLFAT VGAQVDIWDQNRSEPINSFEWGKDTVLSVRFNPGEPDVLITSASDRSITLYDLRMSSPAR KLIMKTRCNSICWNPREPMNFTAVRFICFLYMVLTVE

Transcript Sequence

Transcript ID	Os01t0238900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:7679009:7685849:1 gene:Os01g0238900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-11 description:Similar to Protein SOF1. (Os01t0238900-01)
Sequence	CTCTTTTTCGCTTCCCCCTCCCTTCCGACTCCCCAACGGCGGCGGCGGCGGCGGCGTGGT GCGGCGGCGAGGGTTTTAAGTAGGCTGCGCGGCGGAGAACGCCGGGGACGCGAGCGGAGT GATCTAGCCTTATCCTCCTTCGTCGCCTCCGGATTGGTTTCGCGGCGGCCGGCCGTGTCT CCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATATCGCGCTCCACCGACGAGTT CACGCGGGAGCGCAGCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTTCG TTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGAT ATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTATCATGCATGGC GAAAAACCCCAATTATTTGAAAGCAATATTTTCTGGCTCAATGGATGGGGATATTCGTCT GTGGGACATTGCTGCAAGGAAGACAGTCTGCCAGTTCCCTGGACATCAGGGTGCTGTGAG GGGTTTGGCGACATCTACTGATGGTGATCTTCTAGTATCATGTGGTGTTGACTGCACTGT TCGACTATGGAAAGTCCCTATGCTCAAGATGGTAGACACTAACGATGCTATTGGAGATGC TTCTCAGCCATCAGCGGTCTACACCTGGAAGCATGCGTTTTGGGGTGTTGACCACCAGTG GGATGGCAATCTTTTTGCAACTGTAGGTGCTCAGGTTGATATATGGGATCAAAACAGGTC AGAGCCAATAAATAGCTTTGAATGGGGTAAAGATACAGTTCTGTCCGTGAGATTTAATCC TGGAGAACCTGATGTTCTAATTACATCAGCTAGTGATCGGAGTATAACACTTTATGATCT ACGCATGTCATCCCCTGCTAGAAAGCTAATCATGAAGACAAGGTGCAACTCAATATGCTG GAACCCTAGGGAGCCTATGAACTTCACTGCCGTAAGATTTATTTGTTTCCTGTATATGGT GCTGACTGTCGAATGAATTATTTGAACTGTATGCTATAGTTCTGGAGCTTACCTGTCAAG CTTTCCTTACAAATAGTGCAAGCCTAAACTATGTTTTGGTCTTTTTATCATCTAGTAACA TCTATCCTGATACTTTTTCTTGCTAGGTAAATGAAGATACAAATTGCTATTCCTTTGATG CTAGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTGATGGACA TTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAGTGCGGA TCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGG TGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGA ATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTGGGAGTTCTTCTTCCAAGAGAAC GCAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCA AGCGGATTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGC GAACGATGATTGAAGCAGAAAACCGTAAAGAAGAAAGGAGGCGTGCGCACAGTGCCCCCG GGAGCATGCCTGTGCAGCCCTTCAGGAAGAGAAGAATAATCAAAGAAGTAGAGTAAAATG GAAGAATATGTGTGGCACAAAACCAAACGCCGCGATTTTACAGGTCTAGCTCAAGACGGG GACATGTCTAATCATCCACCAAACCATTCATCGGAGAGTGACGTCTGTTGCAAACAGTGT TTAGAAAGCAGCCCCAGCAGCAGCAGAAATCGAAGGGTCTATGGTTCATCAGTTTATAAA GGGCTGAAATTTTTGCTTCTGCTCAATTTGTTGTATCGTTTTGCTTGTAACGATTTATGA ACCTTCTAGTTATGTATCTCGTATTACTTTTCTGATGAGTAACCTGTGTAATAGCTATGT CGAATGGAACAATACATGTGTGGCTCTGTC