Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0234900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:7450936:7453683:-1 gene:Os01g0234900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-14, RING-HC protein 14 description:Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os01t0234900-01)
Sequence	ATGGACGTGGACAGCGTCGAGTGCCTGTCGCTGCCGGACTCCTCCTCCTCCTCCGGCGCC GGCGCCGGCGGCGGAGGGGGTGGGGGTGGGGGTGGGGGCGTAGGCGCCATGGATGCGGCG GACGACGTCGGCCTCGCGCTGCACGCGCACGGCGCGCTCCTGGCGGCCGCGGCGGCCGCG CGGGCGGCGGCGTGCTCCAAGGGAGGGGGAGGGGGAGGCGCGGCGGCCGGGAGCGGCGTG CACGAGCTGCTCGAGTGCCCCGTCTGCACCAACTCCATGTACCCGCCGATCCACCAGTGC CAAAATGGACACACTCTGTGTTCCACCTGCAAAGCTAGGGTGCACAACCGTTGCCCTACA TGCAGACAAGAGCTTGGTGATATCAGGTGTTTGGCCCTGGAGAAAGTAGCTGAATCGCTT GAGCTTCCCTGTAAGTACTGCTCTTTGGGGTGCCCAGAGATCTTCCCATACTACAGCAAG ATAAAACATGAAGCGCAGTGCATGTTTAGACCATACAATTGCCCTTATGCTGGTTCTGAG TGTGCTGTGGTGGGTGATATCCCTTATCTTGTTGCCCATTTGAGGGATGATCACAAAGTT GATATGCATAGTGGTTGCACATTCAACCATAGATATGTCAAGTCCAACCCACGAGAAGTC GAAAATGCCACCTGGATGCTGACGGTCTTCCACTGTTTCGGGCAATACTTCTGCCTGCAC TTTGAGGCCTTCCAGCTTGGGATGGCACCAGTCTATATGGCCTTTCTCCGTTTCATGGGT GATGAAAATGAGGCAAGGAACTATAGCTACAGCCTTGAGGTCGGCGCAAACGGCAGGAAA ATGGTATGGGAGGGCACCCCCCGAAGTGTCCGGGACAGCCACCGGAAGGTGCGGGACAGC CATGATGGCCTCATCATCCAGAGGAACATGGCGCTGTTCTTCTCGGGGGGCGACCGAAAG GAGCTGAAGCTGAGGATCACCGGCCGGATCTGGAAGGAGCAGCAGACCCCAGACGGTGCC TGCATACCAAATCTCTGTAGCTAA

Peptide Sequence

PEP ID	Os01t0234900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:7450936:7453683:-1 gene:Os01g0234900 transcript:Os01t0234900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-14, RING-HC protein 14 description:Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os01t0234900-01)
Sequence	MDVDSVECLSLPDSSSSSGAGAGGGGGGGGGGGVGAMDAADDVGLALHAHGALLAAAAAA RAAACSKGGGGGGAAAGSGVHELLECPVCTNSMYPPIHQCQNGHTLCSTCKARVHNRCPT CRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKIKHEAQCMFRPYNCPYAGSE CAVVGDIPYLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLH FEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKMVWEGTPRSVRDSHRKVRDS HDGLIIQRNMALFFSGGDRKELKLRITGRIWKEQQTPDGACIPNLCS

Transcript Sequence

Transcript ID	Os01t0234900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:7450936:7453683:-1 gene:Os01g0234900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-14, RING-HC protein 14 description:Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os01t0234900-01)
Sequence	CTCACAAAATTTACTCGCCGGAAAACCCAAAAGAACGGAAAAGAAAAAAAAAGTCAGGCA GTCGTCGCCGTGCTCGCCGCGGCGGGGTCCATCGGTGTCGCCGGCGCCACCACCACAACC CAGACGAGGGGAGACGGCATCCAGGATCCAGCAATAATAGCGCGTCGCGGTGGTCGTCGT CCTCACCTAATCCCCCCCCCCCCTCCCCATCCATCTATTCTCAGCCAAAAGCTCCCCTCT TCTCTCTCTCCCTCTCCCTCTCGCTTTCGTTTCCCTTTTTACCCCCGCAATCCGCGGCGC GCCACCGCCACAACAAAGCCCCCGCTCGCCGGAGCAGGAGCCGCCCCCCCCCCCCGGTGC CCACCCGCCGTGCCCCCCAATTCCTCCCCGTTCGTGGCAGGCGGGGGTGCGGGCGCGGGC GCGGGTGCGGCCATGGACGTGGACAGCGTCGAGTGCCTGTCGCTGCCGGACTCCTCCTCC TCCTCCGGCGCCGGCGCCGGCGGCGGAGGGGGTGGGGGTGGGGGTGGGGGCGTAGGCGCC ATGGATGCGGCGGACGACGTCGGCCTCGCGCTGCACGCGCACGGCGCGCTCCTGGCGGCC GCGGCGGCCGCGCGGGCGGCGGCGTGCTCCAAGGGAGGGGGAGGGGGAGGCGCGGCGGCC GGGAGCGGCGTGCACGAGCTGCTCGAGTGCCCCGTCTGCACCAACTCCATGTACCCGCCG ATCCACCAGTGCCAAAATGGACACACTCTGTGTTCCACCTGCAAAGCTAGGGTGCACAAC CGTTGCCCTACATGCAGACAAGAGCTTGGTGATATCAGGTGTTTGGCCCTGGAGAAAGTA GCTGAATCGCTTGAGCTTCCCTGTAAGTACTGCTCTTTGGGGTGCCCAGAGATCTTCCCA TACTACAGCAAGATAAAACATGAAGCGCAGTGCATGTTTAGACCATACAATTGCCCTTAT GCTGGTTCTGAGTGTGCTGTGGTGGGTGATATCCCTTATCTTGTTGCCCATTTGAGGGAT GATCACAAAGTTGATATGCATAGTGGTTGCACATTCAACCATAGATATGTCAAGTCCAAC CCACGAGAAGTCGAAAATGCCACCTGGATGCTGACGGTCTTCCACTGTTTCGGGCAATAC TTCTGCCTGCACTTTGAGGCCTTCCAGCTTGGGATGGCACCAGTCTATATGGCCTTTCTC CGTTTCATGGGTGATGAAAATGAGGCAAGGAACTATAGCTACAGCCTTGAGGTCGGCGCA AACGGCAGGAAAATGGTATGGGAGGGCACCCCCCGAAGTGTCCGGGACAGCCACCGGAAG GTGCGGGACAGCCATGATGGCCTCATCATCCAGAGGAACATGGCGCTGTTCTTCTCGGGG GGCGACCGAAAGGAGCTGAAGCTGAGGATCACCGGCCGGATCTGGAAGGAGCAGCAGACC CCAGACGGTGCCTGCATACCAAATCTCTGTAGCTAAGCAATCACAACATTCAGAAGAAAC AAAGAAACTCAACTCCACTTTGCGGCCGGATAACATCTATCCCGTTGCCATGTCTTACTG TTTTTTTGTATGCTCCGAGGCAACGCCTTCATGTTGTACCTTTGCTAAACAAACATTAGG AGGGTAGGACGCTCTTGTAAAGTAAAATGTGTGTATATGGCACCCCATATCTTACAGGTT GGCT