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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0234499-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:7430568:7431335:1 gene:Os01g0234499 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os01t0234499-00)
Sequence

ATGGCGGCGGAGCACGTTGCTGATCGTGTCGTGTCGGTCTTCGTCGTCGCCGCAGCGGTG
GCCGGGGCGGGGTTCATCATGCGGGACATGACGGTGGAGAACCGCGCCGGCGCGGCGAGG
CACCAGGCGGTGGCGCTGCTGCTGAGCGGCGACCACGCGGTGGTGTACCGGAGCGCCGTG
CTGGGGTACCAGGACACGCTGTACGCGCACGCGCAGCGGCAGTTCTACCGCGACTGCGAC
GTCGCCGGCACGGTGGACTTCGTGTTCGGGAACGCCGCCGTGGTGCTGCAGAACTGCACG
CTGTGGGCGCGGCGGCCGCTGCCGGGGCAGGAGAACACGGTCACGGCGCAGGGGCGGCGC
GACCCGAACCAGAGCACCGGCATCTCCGTGCACGGCTGCCGCCTCCTCCCTTCGCCGGAG
CTCGAGCTCGCGCCGGCGGCGCGGCGCGGCCGCGCGGCGACGTACCTCGGGCGGCCATGG
AAGCCGTACTCGAGGGCGGTGTACATGATGTCGTACATAGCGGGCCACGTCCACGCCGCC
GGCTGGCTCGCCTGGGACGCGTCGGGGCGCGCGCCGGACACGCTCTACTACGGCGAGTAC
CGCAACTCCGGCCCCGGCGCGGCGGTCGGCGGGCGCGTGCCATGGCCGGGCCACCGCGTC
ATCAAGCTGCCGGAGGAGGCCATGGAGTTCACCGTCGGGAGGTTCATCGGCGGCTACTCC
TGGCTGCCGCCCACCGGCGTCGCCTTCGTAGCCGGCCTGACCGTGTGA

Peptide Sequence

PEP ID

Os01t0234499-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:7430568:7431335:1 gene:Os01g0234499 transcript:Os01t0234499-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os01t0234499-00)
Sequence

MAAEHVADRVVSVFVVAAAVAGAGFIMRDMTVENRAGAARHQAVALLLSGDHAVVYRSAV
LGYQDTLYAHAQRQFYRDCDVAGTVDFVFGNAAVVLQNCTLWARRPLPGQENTVTAQGRR
DPNQSTGISVHGCRLLPSPELELAPAARRGRAATYLGRPWKPYSRAVYMMSYIAGHVHAA
GWLAWDASGRAPDTLYYGEYRNSGPGAAVGGRVPWPGHRVIKLPEEAMEFTVGRFIGGYS
WLPPTGVAFVAGLTV

Transcript Sequence

Transcript ID

Os01t0234499-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:7430568:7431335:1 gene:Os01g0234499 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os01t0234499-00)
Sequence

ATGGCGGCGGAGCACGTTGCTGATCGTGTCGTGTCGGTCTTCGTCGTCGCCGCAGCGGTG
GCCGGGGCGGGGTTCATCATGCGGGACATGACGGTGGAGAACCGCGCCGGCGCGGCGAGG
CACCAGGCGGTGGCGCTGCTGCTGAGCGGCGACCACGCGGTGGTGTACCGGAGCGCCGTG
CTGGGGTACCAGGACACGCTGTACGCGCACGCGCAGCGGCAGTTCTACCGCGACTGCGAC
GTCGCCGGCACGGTGGACTTCGTGTTCGGGAACGCCGCCGTGGTGCTGCAGAACTGCACG
CTGTGGGCGCGGCGGCCGCTGCCGGGGCAGGAGAACACGGTCACGGCGCAGGGGCGGCGC
GACCCGAACCAGAGCACCGGCATCTCCGTGCACGGCTGCCGCCTCCTCCCTTCGCCGGAG
CTCGAGCTCGCGCCGGCGGCGCGGCGCGGCCGCGCGGCGACGTACCTCGGGCGGCCATGG
AAGCCGTACTCGAGGGCGGTGTACATGATGTCGTACATAGCGGGCCACGTCCACGCCGCC
GGCTGGCTCGCCTGGGACGCGTCGGGGCGCGCGCCGGACACGCTCTACTACGGCGAGTAC
CGCAACTCCGGCCCCGGCGCGGCGGTCGGCGGGCGCGTGCCATGGCCGGGCCACCGCGTC
ATCAAGCTGCCGGAGGAGGCCATGGAGTTCACCGTCGGGAGGTTCATCGGCGGCTACTCC
TGGCTGCCGCCCACCGGCGTCGCCTTCGTAGCCGGCCTGACCGTGTGA