Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0233800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:7400509:7404310:1 gene:Os01g0233800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Viroid symptom modulation protein. (Os01t0233800-01)
Sequence

ATGAACTCCATGTCATACAACAAGCTGTCCATAACGAATGACAGAATGGATTTCAATACC
CGTGGAAATGCAGTCCCCAATGGCAAATTAGATCGGAATCAGTCAGGTGTTTCAGCCAAT
CGATCCTCAGCCTCCAAACCAACAGCACGCTCCAAGAAGAAACCGGATCAAGCTGACAAA
ACAACCCCAAATCCAGCGCAGAATTCAGCATCATCAGCAACAAGATCCGAAGCAGCGACC
GTCACGACGACCACGAAATCGCCGGCGATCAGCGTGGACAGAAGCAGCATCGCGAGAAGC
AACAGCCTGGACAGCTTCAGCTACGGCCAGGCGAAGCGGCACACCGGCGGCGACAGCCGG
TGGGACGCCGTCCGGTCGGCCAGCTCCGTGGACTGCCCCCTCGGCCTCGTCCACTTCAGG
CTCCTCAAGCGGCTCGGCTACGGCGACATCGGCAGCGTCTACCTCGTGGAGCTCAGGGAC
ACCGACGCCTTCTTCGCGATGAAGGTGATGGACAAGGAGTCGCTCATCAGCAGGAACAAG
CTGGTCAGGGCACAGACCGAGAGGGAGATCCTCGGCCTCCTTGATCATCCGTTCCTCCCT
ACGTTGTACACGCACTTCGAGACCGACAAGTTCTACTGCCTCGTCATGGAGTATTGCTCC
GGCGGCAACCTCCATTCGCTCCGGCAGAGGCAGCTCAACAAGCATTTCAACGAGCAAGCT
GCAAGGTTCTACGCATCCGAGGTGTTGCTTGCGCTGGAGTACCTGCACATGCTAGGCATT
GTGTACAGGGACCTCAAGCCCGAGAACGTCCTTGTCCGGGACGACGGCCACATCATGCTC
TCCGACTTCGACCTGTCGCTGCGGTGCTCCGTGTGCCCGATGCTGGTGAAGTCGTCGTCG
GTGCACGCGGGCGCCAACGGCGTCGTGAAGGGCCTCGCCGCCGGTGGCGGCGGCGACGGC
GAGGGCGTCGGCGTCGGCTGCATGCAGCCGTCGGCGTTCTTGCCGCGGATCCTCCCAAAG
AGGAGCCGCAAGACGTCCAAGTCGGACCTCGGGCTCCTCCACGGCTCGCCGCTGGAGTTC
AACGCGGAGCCGACGGACGCGCGGTCCATGTCGTTCGTGGGCACGCACGAGTACCTGGCG
CCGGAGATCATCCGCGGCGAGGGGCACGGCAGCGCCGTCGACTGGTGGACGTTCGGGGTG
TTCCTCTACGAGCTCCTCCACGGCATGACGCCATTCAAGGGGAGCAGCAACCGCGCCACG
CTCTGCAACGTCGTCGAGCAGCCGCTCCGGTTCCCCGACGGCGGCGCGTTCCCGGCGCCG
GCGGCGGCGAGCGGCGTCGCGCGGGACCTCATCCGGGGCCTCCTGGTGAAGGACCCCGGC
AAGAGGATCGCGTCGAGGAGGGGCGCCACCGAGATCAAGCAGCATCCCTTCTTCGAGGGC
GTCAACTGGGCGCTCGTGCGCAGCGCCCACCCGCCATCGGTGCCTGACCCCGTCGACTTC
AGCCAGTTCGGCGTGAGGGAGAAGCCGGCGGCGGCGCCGACGAAGGTGGCCAAGCCGGCG
GCGAGCGATTCCTCCTCCGGCGACTTCGAGTATTTCTAG

Peptide Sequence

PEP ID

Os01t0233800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:7400509:7404310:1 gene:Os01g0233800 transcript:Os01t0233800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Viroid symptom modulation protein. (Os01t0233800-01)
Sequence

MNSMSYNKLSITNDRMDFNTRGNAVPNGKLDRNQSGVSANRSSASKPTARSKKKPDQADK
TTPNPAQNSASSATRSEAATVTTTTKSPAISVDRSSIARSNSLDSFSYGQAKRHTGGDSR
WDAVRSASSVDCPLGLVHFRLLKRLGYGDIGSVYLVELRDTDAFFAMKVMDKESLISRNK
LVRAQTEREILGLLDHPFLPTLYTHFETDKFYCLVMEYCSGGNLHSLRQRQLNKHFNEQA
ARFYASEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCSVCPMLVKSSS
VHAGANGVVKGLAAGGGGDGEGVGVGCMQPSAFLPRILPKRSRKTSKSDLGLLHGSPLEF
NAEPTDARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHGMTPFKGSSNRAT
LCNVVEQPLRFPDGGAFPAPAAASGVARDLIRGLLVKDPGKRIASRRGATEIKQHPFFEG
VNWALVRSAHPPSVPDPVDFSQFGVREKPAAAPTKVAKPAASDSSSGDFEYF

Transcript Sequence

Transcript ID

Os01t0233800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:7400509:7404310:1 gene:Os01g0233800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Viroid symptom modulation protein. (Os01t0233800-01)
Sequence

TCTCCATCCACCTATTCTCGCCCCACCCTCTCCTCCTCCTCCTCCTCCTCCGCACCCACA
TCCAGGCCGTCCCGCCGCGGCTGGATGAGGGCTCATCGATCCCTTGCCGGCCGCCGCGAC
CGCGGTGCGTCCATGGAGCTTGCGCGCCTTGGCCTCTCTTCTGTCACCGCGATGTCTCGC
CGTGGAGCTTGAAGGCCGCCGTTGGTTCGGTCACTGCTAGATGAACTCCATGTCATACAA
CAAGCTGTCCATAACGAATGACAGAATGGATTTCAATACCCGTGGAAATGCAGTCCCCAA
TGGCAAATTAGATCGGAATCAGTCAGGTGTTTCAGCCAATCGATCCTCAGCCTCCAAACC
AACAGCACGCTCCAAGAAGAAACCGGATCAAGCTGACAAAACAACCCCAAATCCAGCGCA
GAATTCAGCATCATCAGCAACAAGATCCGAAGCAGCGACCGTCACGACGACCACGAAATC
GCCGGCGATCAGCGTGGACAGAAGCAGCATCGCGAGAAGCAACAGCCTGGACAGCTTCAG
CTACGGCCAGGCGAAGCGGCACACCGGCGGCGACAGCCGGTGGGACGCCGTCCGGTCGGC
CAGCTCCGTGGACTGCCCCCTCGGCCTCGTCCACTTCAGGCTCCTCAAGCGGCTCGGCTA
CGGCGACATCGGCAGCGTCTACCTCGTGGAGCTCAGGGACACCGACGCCTTCTTCGCGAT
GAAGGTGATGGACAAGGAGTCGCTCATCAGCAGGAACAAGCTGGTCAGGGCACAGACCGA
GAGGGAGATCCTCGGCCTCCTTGATCATCCGTTCCTCCCTACGTTGTACACGCACTTCGA
GACCGACAAGTTCTACTGCCTCGTCATGGAGTATTGCTCCGGCGGCAACCTCCATTCGCT
CCGGCAGAGGCAGCTCAACAAGCATTTCAACGAGCAAGCTGCAAGGTTCTACGCATCCGA
GGTGTTGCTTGCGCTGGAGTACCTGCACATGCTAGGCATTGTGTACAGGGACCTCAAGCC
CGAGAACGTCCTTGTCCGGGACGACGGCCACATCATGCTCTCCGACTTCGACCTGTCGCT
GCGGTGCTCCGTGTGCCCGATGCTGGTGAAGTCGTCGTCGGTGCACGCGGGCGCCAACGG
CGTCGTGAAGGGCCTCGCCGCCGGTGGCGGCGGCGACGGCGAGGGCGTCGGCGTCGGCTG
CATGCAGCCGTCGGCGTTCTTGCCGCGGATCCTCCCAAAGAGGAGCCGCAAGACGTCCAA
GTCGGACCTCGGGCTCCTCCACGGCTCGCCGCTGGAGTTCAACGCGGAGCCGACGGACGC
GCGGTCCATGTCGTTCGTGGGCACGCACGAGTACCTGGCGCCGGAGATCATCCGCGGCGA
GGGGCACGGCAGCGCCGTCGACTGGTGGACGTTCGGGGTGTTCCTCTACGAGCTCCTCCA
CGGCATGACGCCATTCAAGGGGAGCAGCAACCGCGCCACGCTCTGCAACGTCGTCGAGCA
GCCGCTCCGGTTCCCCGACGGCGGCGCGTTCCCGGCGCCGGCGGCGGCGAGCGGCGTCGC
GCGGGACCTCATCCGGGGCCTCCTGGTGAAGGACCCCGGCAAGAGGATCGCGTCGAGGAG
GGGCGCCACCGAGATCAAGCAGCATCCCTTCTTCGAGGGCGTCAACTGGGCGCTCGTGCG
CAGCGCCCACCCGCCATCGGTGCCTGACCCCGTCGACTTCAGCCAGTTCGGCGTGAGGGA
GAAGCCGGCGGCGGCGCCGACGAAGGTGGCCAAGCCGGCGGCGAGCGATTCCTCCTCCGG
CGACTTCGAGTATTTCTAGCTCCCATCTGTGAGTATTTCTAGGAACTGAAAAATACATTT
AGATACAGAAAAAAAATATACAGTCTATTGATTCTTTGTTACTGTTGTATTGCTCCTTAA
TTACAGTACACCCATACATGATTCTTGGGATCCTGGTATACACATGTACAAACAATGTGA
TAGCTTGTTGCTAACAATGATTAATGAACTGTAAAATATTCTGTTACACTACTGACAGAT
GCAGATGTTCATTTCTTTAGCTGA