Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0228500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:7095864:7097381:-1 gene:Os01g0228500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os01t0228500-01)
Sequence

ATGAAGCCGGCGACGTCGGAGTCCGACATGACGAGCCTCGCGACGTCGTCGCCGTCGCGG
TCGCCCAAGGCGGCGGCGGCGGCGTACTACGTCCAGATCAGCCCGTCGCGCGACTCCCAC
GACGACGACGGCGACAAGTCGCCGTCGACGCAGGCCACGCCGGTGTACAACAACAGCCCG
CTCGACTCGCCGTCGCACCACTCCTCCTCCTTCGGCCGCCACTCCAGGGTCTCCTCCGCC
AGCCGCTTCTCCGGCAACCTCCGGTCGGCGTCCGGGAGGAGCAGGCTTGGTGGCGGCGGC
GGCCGGAGGCGGTTGGGCGCCAAGGGGTGGCGCGACGTCGACGCCATCATCGACGAGGAG
GAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCGGCTATGAGCCATCCAGA
TGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTCGTCTGCCTC
ATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAGAGCTTGACAGTG
GGGAACTTTTATGCCGGAGAAGGTATAGACCGGACCGGGGTGCCGACAAAGCTGGTGACA
ATGAACTGCTCTCTGCAGATAAATGTTCACAACCCTTCCACGATGTTCGGCATTCATGTC
TCTTCGACATCGATTCAGATCTTGTTCTCGCAAATCGCGATCGCCAACGGTCAGTTGGAG
AAGTTCTACCAGCCAAGGTCAAGCCATCATGTCGCCTCGGCGATCGTTCATGGCGAGAAG
ATCCCTCTCTATGGAGCTGGAGAAACATTCGCCTTGTCGAATGCTGGAGGTGCTGTGCCA
CTGACTCTAGACTTGGTGGTAAGAGCTAGAGGGTATGTGATTGGTAAGCTTGTGAGGGTG
ACACACACAAAGCGTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCCAAGCCGATT
AGGTTTATCCAGAGTGCTTGTAGTTACACCTGA

Peptide Sequence

PEP ID

Os01t0228500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:7095864:7097381:-1 gene:Os01g0228500 transcript:Os01t0228500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os01t0228500-01)
Sequence

MKPATSESDMTSLATSSPSRSPKAAAAAYYVQISPSRDSHDDDGDKSPSTQATPVYNNSP
LDSPSHHSSSFGRHSRVSSASRFSGNLRSASGRSRLGGGGGRRRLGAKGWRDVDAIIDEE
EEGAYDEFDDDDDGGYEPSRCCVLAFRFSLLALAFTLVCLIVWGIARHYKPGVLVKSLTV
GNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVSSTSIQILFSQIAIANGQLE
KFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGAVPLTLDLVVRARGYVIGKLVRV
THTKRVKCPVVIDSGSSKPIRFIQSACSYT

Transcript Sequence

Transcript ID

Os01t0228500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:7095864:7097381:-1 gene:Os01g0228500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os01t0228500-01)
Sequence

CAGGTTCAGTTTCAGCAAGAGCTAAACTCGATCGGATTCAGACCGCGAAGCTAAGCTTTG
CGAAGGAGGATGAAGCCGGCGACGTCGGAGTCCGACATGACGAGCCTCGCGACGTCGTCG
CCGTCGCGGTCGCCCAAGGCGGCGGCGGCGGCGTACTACGTCCAGATCAGCCCGTCGCGC
GACTCCCACGACGACGACGGCGACAAGTCGCCGTCGACGCAGGCCACGCCGGTGTACAAC
AACAGCCCGCTCGACTCGCCGTCGCACCACTCCTCCTCCTTCGGCCGCCACTCCAGGGTC
TCCTCCGCCAGCCGCTTCTCCGGCAACCTCCGGTCGGCGTCCGGGAGGAGCAGGCTTGGT
GGCGGCGGCGGCCGGAGGCGGTTGGGCGCCAAGGGGTGGCGCGACGTCGACGCCATCATC
GACGAGGAGGAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCGGCTATGAG
CCATCCAGATGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTC
GTCTGCCTCATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAGAGC
TTGACAGTGGGGAACTTTTATGCCGGAGAAGGTATAGACCGGACCGGGGTGCCGACAAAG
CTGGTGACAATGAACTGCTCTCTGCAGATAAATGTTCACAACCCTTCCACGATGTTCGGC
ATTCATGTCTCTTCGACATCGATTCAGATCTTGTTCTCGCAAATCGCGATCGCCAACGGT
CAGTTGGAGAAGTTCTACCAGCCAAGGTCAAGCCATCATGTCGCCTCGGCGATCGTTCAT
GGCGAGAAGATCCCTCTCTATGGAGCTGGAGAAACATTCGCCTTGTCGAATGCTGGAGGT
GCTGTGCCACTGACTCTAGACTTGGTGGTAAGAGCTAGAGGGTATGTGATTGGTAAGCTT
GTGAGGGTGACACACACAAAGCGTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCC
AAGCCGATTAGGTTTATCCAGAGTGCTTGTAGTTACACCTGATGCAGTGCCTTGGCCTTC
TATAATCTCAATAAGGGCTGTGATCATGTACTCCCTCCGTATCATAATATAAGGGATTTT
AAGTTTTTGCT