Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0227800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:7071481:7073788:1 gene:Os01g0227800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA, clone: J075083L18, full insert sequence. (Os01t0227800-01)
Sequence

ATGGCCGTCTCACTCCTCCCCGCCGTCCTTGTACTCCTCGCCATCGTCGCGCCGCTCCTG
TACCTCGTGCTGCTTCCCGCCGTGAAGTACACGACGAGAAATGGCGCTGCGAGGTGGGAG
GACGACGGCGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCG
CTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCC
GCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCG
TCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACATGGAGTTCGCGAGCCGGCCC
AGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTAC
GGCGAGTACTGGCGCCAGGCGCGCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGC
GTCCTCTCGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGC
GCCGCCGCCGCCGACGTCGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACC
GTCTTGACGCGCATCGCGTTCGGCGACGAGAGCGCGCGCGGCGGCGGCGGCGGCGGCGAC
AGGGGGCGCGAGCTGAGGAAGGTGTTCGACGACTTCGCGAGGTTGCTCGGGACGGAGCCG
ATGGGGGAGCTCTTGCCATGGTTCTGGTGGGTGGACGCCTTGAGGGGGATAGACGGGAAG
GTGCAGCGCACGTTTGAGGCGCTGGACGGCATCCTCGAGAGGGTGATCGACGATCACCGT
CGCCGCCGTGAAGGCGGCCGGCGTATGGACGACGACGGCGGCGGCGATCACCGGGATTTC
GTGGACGTGTTGCTCGACGTGAACGAGACGGACAAGGACGCTGGCATTCAGCTCGGCACC
GTCGAAATCAAGGCTATTATCATGGACATGTTTGTAGGGGGCTCAGACACTACGACCACG
ATGATGGCATGGACCATGGCCGAGCTGATCAACCACCCACGCGCCATGCGCAAAGCGCAG
AACGAGATCTGGGCAGTCGTGGGCAACACTAGTCATGTCACCAAGGACCACGTGGACAAG
CTGCCCTACCTCAAGGCTGTTTTCAAGGAGACGCTCCGGCTACACCCACCACTCCCGCTC
CTCATCCCACGAGAGCCACCGGCGGACACCCAGATCCTGGGTTACACCATACCAGCGCAC
ACGCGGGTGGTGATCAACGCGTGGGCCATCGGCCGAGACGCGGCAGCATGGGGGCAGCAA
CCGGACGAGTTCTCACCGGAGAAATTCCTCAACAGCACCATTGACTACAAGGGACAGGAC
TTCGAGCTGCTACCATTTGGCGCCGGTAGGAGGGGGTGCCCCGGGATCGTGTTCGGGGTG
TCAGCCATGGAGATAGCACTCGCGAGCTTGCTCTACCATTTTGACTGGGAGGCGGCGGCA
ACTGATCACAGGAGGAGGGGCAGCCAAGCATGGGCGTTGCCAGTAGACATGAGTGAGGTC
AATGGGATAGCTGTTCATCTCAAGTATGGTCTACATGTCGTCGCTAAACCACGTATGCCT
TAA

Peptide Sequence

PEP ID

Os01t0227800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:7071481:7073788:1 gene:Os01g0227800 transcript:Os01t0227800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA, clone: J075083L18, full insert sequence. (Os01t0227800-01)
Sequence

MAVSLLPAVLVLLAIVAPLLYLVLLPAVKYTTRNGAARWEDDGGDGRRRRRLPPSPRGLP
LLGHLHLLGALPHRALRSLAAAHGPVLLLRLGRVPVVVVSSAAAAEEVMRSRDMEFASRP
RMAMAELLLYGGRDVAFAPYGEYWRQARRICVVHLLSARRVLSFRRVREEEAAALVGRVR
AAAADVVVDLSDLLIAYSNTVLTRIAFGDESARGGGGGGDRGRELRKVFDDFARLLGTEP
MGELLPWFWWVDALRGIDGKVQRTFEALDGILERVIDDHRRRREGGRRMDDDGGGDHRDF
VDVLLDVNETDKDAGIQLGTVEIKAIIMDMFVGGSDTTTTMMAWTMAELINHPRAMRKAQ
NEIWAVVGNTSHVTKDHVDKLPYLKAVFKETLRLHPPLPLLIPREPPADTQILGYTIPAH
TRVVINAWAIGRDAAAWGQQPDEFSPEKFLNSTIDYKGQDFELLPFGAGRRGCPGIVFGV
SAMEIALASLLYHFDWEAAATDHRRRGSQAWALPVDMSEVNGIAVHLKYGLHVVAKPRMP

Transcript Sequence

Transcript ID

Os01t0227800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:7071481:7073788:1 gene:Os01g0227800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA, clone: J075083L18, full insert sequence. (Os01t0227800-01)
Sequence

GCGCGCAACTACAACCAAGTAACCAAACGCTTTCCGTTGCACGCACGCGCGCAAAACAAT
GGCCGTCTCACTCCTCCCCGCCGTCCTTGTACTCCTCGCCATCGTCGCGCCGCTCCTGTA
CCTCGTGCTGCTTCCCGCCGTGAAGTACACGACGAGAAATGGCGCTGCGAGGTGGGAGGA
CGACGGCGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCT
GCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGC
GGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTC
GGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACATGGAGTTCGCGAGCCGGCCCAG
GATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGG
CGAGTACTGGCGCCAGGCGCGCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGT
CCTCTCGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGC
CGCCGCCGCCGACGTCGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGT
CTTGACGCGCATCGCGTTCGGCGACGAGAGCGCGCGCGGCGGCGGCGGCGGCGGCGACAG
GGGGCGCGAGCTGAGGAAGGTGTTCGACGACTTCGCGAGGTTGCTCGGGACGGAGCCGAT
GGGGGAGCTCTTGCCATGGTTCTGGTGGGTGGACGCCTTGAGGGGGATAGACGGGAAGGT
GCAGCGCACGTTTGAGGCGCTGGACGGCATCCTCGAGAGGGTGATCGACGATCACCGTCG
CCGCCGTGAAGGCGGCCGGCGTATGGACGACGACGGCGGCGGCGATCACCGGGATTTCGT
GGACGTGTTGCTCGACGTGAACGAGACGGACAAGGACGCTGGCATTCAGCTCGGCACCGT
CGAAATCAAGGCTATTATCATGGACATGTTTGTAGGGGGCTCAGACACTACGACCACGAT
GATGGCATGGACCATGGCCGAGCTGATCAACCACCCACGCGCCATGCGCAAAGCGCAGAA
CGAGATCTGGGCAGTCGTGGGCAACACTAGTCATGTCACCAAGGACCACGTGGACAAGCT
GCCCTACCTCAAGGCTGTTTTCAAGGAGACGCTCCGGCTACACCCACCACTCCCGCTCCT
CATCCCACGAGAGCCACCGGCGGACACCCAGATCCTGGGTTACACCATACCAGCGCACAC
GCGGGTGGTGATCAACGCGTGGGCCATCGGCCGAGACGCGGCAGCATGGGGGCAGCAACC
GGACGAGTTCTCACCGGAGAAATTCCTCAACAGCACCATTGACTACAAGGGACAGGACTT
CGAGCTGCTACCATTTGGCGCCGGTAGGAGGGGGTGCCCCGGGATCGTGTTCGGGGTGTC
AGCCATGGAGATAGCACTCGCGAGCTTGCTCTACCATTTTGACTGGGAGGCGGCGGCAAC
TGATCACAGGAGGAGGGGCAGCCAAGCATGGGCGTTGCCAGTAGACATGAGTGAGGTCAA
TGGGATAGCTGTTCATCTCAAGTATGGTCTACATGTCGTCGCTAAACCACGTATGCCTTA
ACTTGAGAAAAGATGTTACCATCTGCAGTTCAACTAATAGGACCCTGGTTATGTATTGGT
TGATTAACTTTTGAGGATATGGGATATCCTATCAATGTAGACCTCACTCGAGGAGATTGA
ATCGATAATGTGGAACACAACTACAACAGTCCATGAGTGATGGTGATGG