Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0219600-00
CDS Infomation	cds chromosome:IRGSP-1.0:1:6541971:6544461:-1 gene:Os01g0219600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9C2 description:Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4). (Os01t0219600-00)
Sequence	ATGGCCAGGAGAGGAGGAGCAGCAGCATCGTCGTCCATGGCTAATCTCCTCGGCGTCGCC TTGGTGCTCGCCGCCACGGCGCAGACGTCGGCGCGTGGCGGCGGCGGCGGCGGACGCCAT GACTACCGCATGGCGCTGAGCAAGAGCATCCTCTACTTCGAGGCGCAGCGCTCCGGCGTG CTCCCCGGTAACCAGAGGATCGCATGGAGGGCCAACTCCGGCCTCGCCGACGGCAAGGCC AACGGCGTGGATCTTGTTGGTGGCTACTACGACGCCGGAGACAACGTCAAGTTCGGGTTC CCGATGGCGTTCACGGTGACCATGATGGCGTGGAGCGTCCTCGAGTACGGGAAGCAGATG GCGGCCGCCGGCGAGCTCGGCCACGCCATGGACGCCGTCAGGTGGGGCGCCGACTACTTC GTCAAGGCGCACCCGGCGCCCAACGTGCTCTACGGCGAGGTTGGAGATGGTGACTCGGAC CACGTCTGCTGGCAGCGGCCGGAGGACATGACGACGAGCCGTCAGGCGTATCGCCTTGAC CCTCAGCATCCTGGCTCTGACCTCGCCGGAGAAACCGCCACGGCATTGGCCGCCGCGTCG CTCGTCTTCCGTAGCTCCAACCCGGGCTACGCAAACCAACTCCTGCAACACTCCAAGCAG CTGTTTGATTTCGCCGACAAGTACCGGGGAAAGTACGACGACAGCATGCCTGTCGTGAAG AAATTTTACGGGTCATTCAGCGGATACGGGGATGAACTACTGTGGGCATCGGCATGGCTA TACCAGGCGACCGACAACCGCCGCTACCTAGATTACTTGGCCAACAATGGTGACGCACTC GGCGGGACCGGTTGGGCTACCAACGAATTCGGCTGGGACGTCAAGTACCCCGGAGTGCAA GTCCTAGCTGCAAAGTTTCTCCTGCAAGGGAAGGCCGGGCCGCACGCCGCCGTGCTGCGG AGGTACCAGCGGAACGCCGACGTCTTCGCGTGCTCCTGCCTCGGCAAGGGCGGCGGCGGT GGCAACGTCGGGAGGACGCCCGGCGGCCTGATGTACCACCAGGGCTGGAACAACCTCCAG TTCGTCACCGGCGCGTCGTTCCTGCTGGCCGTCTACGCCGACCACCTCGCCGCCGCCGGC CGCGGGCAAGCCGTCGTGCGGTGCCAGGCCGGGCCGGCGGCGCGGGCGTCGGAGCTCGTC GCGCTGGCCAAGTCGCAGGTGGACTACATCCTGGGTAGCAACCCGAGGGGGATTAGCTAC ATGGTCGGCTATGGCGCGAGGTACCCGCGGCGCGCGCACCACCGCGGCGCGTCCATCGTC TCCATCAGGGCCAACCCGTCGTTCGTGAGCTGCAAGGATGGGTACGCGAGCTGGTTCGGC CGCGCCGGCAGCAACCCGAACCTGCTCGACGGCGCCGTGGTCGGCGGCCCCGACGGGCGC GACGGCTTCGCCGACGAGAGGAACAACTACCAGCAGACGGAGGTGGCCACCTACAACAAC GCGCCGCTCATGGGCGTCCTCGCTCGCCTCGCCGGCGGCGGCCGCGGCGGGCTCGCCGAA GCAGCGATCAAGAGGCCGGACAACCAGACCTTGCTGCCACCTCTCGCAGCTGCGGCGTCG CCGGTGGAGATCACGCAGCTGAACGCGACGGCGTCGTGGAAGAAGGACGGGAGGACGTAC CGCCGGTACGCGGCGACGGTGAGCAACAGGTCGCCGGCCGGCGGCAAGACGGTCGAGGAG CTCCACATCGGCATCGGCAAGCCGCACGGCCCGGTGTGGGGGCTCGAGAAGGCGGCGAGG TACGGCTACGTGCTCCCGTCGTCGCTGGCCGCCGGCGAGAGCGCCGCCTTCGCCTACGTT GTCCGCGGCCGCGCCGCGCCGCCGCCGGCTGACGTCTGGGTCATCGGCTACAAGCTCGTC TGA

Peptide Sequence

PEP ID	Os01t0219600-00
PEP Infomation	pep chromosome:IRGSP-1.0:1:6541971:6544461:-1 gene:Os01g0219600 transcript:Os01t0219600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9C2 description:Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4). (Os01t0219600-00)
Sequence	MARRGGAAASSSMANLLGVALVLAATAQTSARGGGGGGRHDYRMALSKSILYFEAQRSGV LPGNQRIAWRANSGLADGKANGVDLVGGYYDAGDNVKFGFPMAFTVTMMAWSVLEYGKQM AAAGELGHAMDAVRWGADYFVKAHPAPNVLYGEVGDGDSDHVCWQRPEDMTTSRQAYRLD PQHPGSDLAGETATALAAASLVFRSSNPGYANQLLQHSKQLFDFADKYRGKYDDSMPVVK KFYGSFSGYGDELLWASAWLYQATDNRRYLDYLANNGDALGGTGWATNEFGWDVKYPGVQ VLAAKFLLQGKAGPHAAVLRRYQRNADVFACSCLGKGGGGGNVGRTPGGLMYHQGWNNLQ FVTGASFLLAVYADHLAAAGRGQAVVRCQAGPAARASELVALAKSQVDYILGSNPRGISY MVGYGARYPRRAHHRGASIVSIRANPSFVSCKDGYASWFGRAGSNPNLLDGAVVGGPDGR DGFADERNNYQQTEVATYNNAPLMGVLARLAGGGRGGLAEAAIKRPDNQTLLPPLAAAAS PVEITQLNATASWKKDGRTYRRYAATVSNRSPAGGKTVEELHIGIGKPHGPVWGLEKAAR YGYVLPSSLAAGESAAFAYVVRGRAAPPPADVWVIGYKLV

Transcript Sequence

Transcript ID	Os01t0219600-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:6541971:6544461:-1 gene:Os01g0219600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9C2 description:Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4). (Os01t0219600-00)
Sequence	ATGGCCAGGAGAGGAGGAGCAGCAGCATCGTCGTCCATGGCTAATCTCCTCGGCGTCGCC TTGGTGCTCGCCGCCACGGCGCAGACGTCGGCGCGTGGCGGCGGCGGCGGCGGACGCCAT GACTACCGCATGGCGCTGAGCAAGAGCATCCTCTACTTCGAGGCGCAGCGCTCCGGCGTG CTCCCCGGTAACCAGAGGATCGCATGGAGGGCCAACTCCGGCCTCGCCGACGGCAAGGCC AACGGCGTGGATCTTGTTGGTGGCTACTACGACGCCGGAGACAACGTCAAGTTCGGGTTC CCGATGGCGTTCACGGTGACCATGATGGCGTGGAGCGTCCTCGAGTACGGGAAGCAGATG GCGGCCGCCGGCGAGCTCGGCCACGCCATGGACGCCGTCAGGTGGGGCGCCGACTACTTC GTCAAGGCGCACCCGGCGCCCAACGTGCTCTACGGCGAGGTTGGAGATGGTGACTCGGAC CACGTCTGCTGGCAGCGGCCGGAGGACATGACGACGAGCCGTCAGGCGTATCGCCTTGAC CCTCAGCATCCTGGCTCTGACCTCGCCGGAGAAACCGCCACGGCATTGGCCGCCGCGTCG CTCGTCTTCCGTAGCTCCAACCCGGGCTACGCAAACCAACTCCTGCAACACTCCAAGCAG CTGTTTGATTTCGCCGACAAGTACCGGGGAAAGTACGACGACAGCATGCCTGTCGTGAAG AAATTTTACGGGTCATTCAGCGGATACGGGGATGAACTACTGTGGGCATCGGCATGGCTA TACCAGGCGACCGACAACCGCCGCTACCTAGATTACTTGGCCAACAATGGTGACGCACTC GGCGGGACCGGTTGGGCTACCAACGAATTCGGCTGGGACGTCAAGTACCCCGGAGTGCAA GTCCTAGCTGCAAAGTTTCTCCTGCAAGGGAAGGCCGGGCCGCACGCCGCCGTGCTGCGG AGGTACCAGCGGAACGCCGACGTCTTCGCGTGCTCCTGCCTCGGCAAGGGCGGCGGCGGT GGCAACGTCGGGAGGACGCCCGGCGGCCTGATGTACCACCAGGGCTGGAACAACCTCCAG TTCGTCACCGGCGCGTCGTTCCTGCTGGCCGTCTACGCCGACCACCTCGCCGCCGCCGGC CGCGGGCAAGCCGTCGTGCGGTGCCAGGCCGGGCCGGCGGCGCGGGCGTCGGAGCTCGTC GCGCTGGCCAAGTCGCAGGTGGACTACATCCTGGGTAGCAACCCGAGGGGGATTAGCTAC ATGGTCGGCTATGGCGCGAGGTACCCGCGGCGCGCGCACCACCGCGGCGCGTCCATCGTC TCCATCAGGGCCAACCCGTCGTTCGTGAGCTGCAAGGATGGGTACGCGAGCTGGTTCGGC CGCGCCGGCAGCAACCCGAACCTGCTCGACGGCGCCGTGGTCGGCGGCCCCGACGGGCGC GACGGCTTCGCCGACGAGAGGAACAACTACCAGCAGACGGAGGTGGCCACCTACAACAAC GCGCCGCTCATGGGCGTCCTCGCTCGCCTCGCCGGCGGCGGCCGCGGCGGGCTCGCCGAA GCAGCGATCAAGAGGCCGGACAACCAGACCTTGCTGCCACCTCTCGCAGCTGCGGCGTCG CCGGTGGAGATCACGCAGCTGAACGCGACGGCGTCGTGGAAGAAGGACGGGAGGACGTAC CGCCGGTACGCGGCGACGGTGAGCAACAGGTCGCCGGCCGGCGGCAAGACGGTCGAGGAG CTCCACATCGGCATCGGCAAGCCGCACGGCCCGGTGTGGGGGCTCGAGAAGGCGGCGAGG TACGGCTACGTGCTCCCGTCGTCGCTGGCCGCCGGCGAGAGCGCCGCCTTCGCCTACGTT GTCCGCGGCCGCGCCGCGCCGCCGCCGGCTGACGTCTGGGTCATCGGCTACAAGCTCGTC TGA