Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0212100-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:6112811:6125509:1 gene:Os01g0212100 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02)
Sequence	ATGTCGAGGTTCTGGAGGCCGGGGTCGGAGAAGCCGACGGCGGCGATCGTCGAGGACGAG GAGGGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGGTTTGGG TACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAGTACCGGAAGGCCATC CTCTACCTGGTGGAGCGGCACGCCACGACCATCGTCGTCGGCGAGACCGGCAGCGGAAAG TCCACGCAGATCCCTCAGTACCTTAAAGAGGCTGGATGGGCCGAGGGTGGTCGACTTATA GGCTGCACTCAACCAAGACGATTGGCCGTGCAGTCAGTTGCATCAAGAGTAGCGGAAGAA GTAGGTGTGAGACTCGGAGAAGAAGTTGGTTACACAATCCGATTTGAGGATCAAACAAAT CCAGGTATGACCATGATTAAATTTCTGACAGATGGGGTATTGATCAGAGAAATGATGGAA GATCCTCTTCTGACCAAGTATAGTGTAATTATGGTTGATGAAGCCCATGAACGATCCATT TCAACTGACATGTTGCTGGGTCTTCTGAAAAAGATTCAACGACGTCGGCCCGACTTGCGT CTAATCATATCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAGG CGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCTGCTATTCTT TCTGTGGAAGGTAAAGGTTACACAGTGGAAATCCATTATGTTGAAGAACCTGTTTCAGAC TACTTACAGGCTGCTGTGAATACTGTACTTATTATTCACGAAAAGGAACCACCAGGGGAT ATTTTGGTATTTTTAACTGGCCAGGATGACATAGACGCAGCTGTTAAGATGCTAAATGAA GAAATTCAACACCGTGGAAGACATTATTTAGACCTGCTGATTCTGCCCTTGTACTCTGGC CTTCCGCGGGGAGATCAAGACCTCATTTTTACTCCAACTTCAAAAGGTAAAAGGAAGGTT GTGATATCAACAAACATTGCTGAGACGTCATTAACTCTAGAGGGCGTGGTGTATGTTGTT GATAGTGGGTTTTCCAAGCAGAAGTGTTACAATCCGATTTCTGATATCGAGAGTTTAGTT GTCGCACCAATATCCAAGGCATCCGCAAGACAAAGAGCAGGCCGAGCTGGAAGGGTGCGA CCAGGAAAGTGCTTTAGGCTTTATACAGAGGAATTTTACCTTAAAGAAATGCAGCCAGAA GGGATTCCTGAAATGCAAAGGTCTAACCTTGTTTCCTGCATAACACAGTTGAAAGCTCTA GGAATAGACAACATTTTGGGATTTGATTGGCCAGCTTCTCCATCACCAGAGGCAATGATT CGAGCTCTTGAAGTTCTATATTCCCTGGGAATCCTTGATGAAGATGCCAAACTAACAGTA CCCCTTGGCTTCCAAGTTGCTGAGATCCCTCTGGACCCTATGATTTCAAAAATGATCCTT TCAGCCAATAATTTCGGATGCTCTGATGAGATATTGACCATAGCAGCATTTCTATCTGTT CAATCTGTGTGGGTTTCCATGAGAGGAGTGAAAAAAGAGTTTGATGAAGCTAAGCTCCGT TTTGCTGCTGCTGAGGGAGATCATGTGACGTTCCTGAATATCTACAAAGGATTTCATCAA TCTGGAAAATCTAGTCAGTGGTGTTACAAGAACTTTTTGAACCACCAAGCATTGAAGAAG GTTATTGACATCAGGGAGCAGCTTGTCAGGATTATCAAGAGGTTTGGCATACCACTAACA TCATGTGATAGAGATATGGAGGCAGTAAGAAAAGCTATTATTGCTGGTGCATTTGCTTAT GCATGCCATCTAGAGGAATACAGCCAGAATGGGATGTACAAAACAATAAGGACCTCACAA GAAGTTTATATTCATCCTTCTTCTGTGCTATTTAGGGTTAATCCAAAGTGGGTCATCTAC CAGTCTCTAGTTTCAACTGATAAGCACTATATGCGTAATGTTATTGCCATTGAACCATCA TGGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCAC TAA

Peptide Sequence

PEP ID	Os01t0212100-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:6112811:6125509:1 gene:Os01g0212100 transcript:Os01t0212100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02)
Sequence	MSRFWRPGSEKPTAAIVEDEEGGVLFLPTSTSSSSSSGFGYASLERQRQRLPVYKYRKAI LYLVERHATTIVVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQSVASRVAEE VGVRLGEEVGYTIRFEDQTNPGMTMIKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSI STDMLLGLLKKIQRRRPDLRLIISSATIEARSMSTFFNIRRKNSMLESADHLPNPEPAIL SVEGKGYTVEIHYVEEPVSDYLQAAVNTVLIIHEKEPPGDILVFLTGQDDIDAAVKMLNE EIQHRGRHYLDLLILPLYSGLPRGDQDLIFTPTSKGKRKVVISTNIAETSLTLEGVVYVV DSGFSKQKCYNPISDIESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEFYLKEMQPE GIPEMQRSNLVSCITQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDEDAKLTV PLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKKEFDEAKLR FAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFGIPLT SCDRDMEAVRKAIIAGAFAYACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH

Transcript Sequence

Transcript ID	Os01t0212100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:6112811:6125509:1 gene:Os01g0212100 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02)
Sequence	CACTATCGCTCCCCCATCCACCACAACACGGACACACGGTCTTCCCCACCGGCGACGACG AGAAGCGGCGGCGCGTGCCATGTCGAGGTTCTGGAGGCCGGGGTCGGAGAAGCCGACGGC GGCGATCGTCGAGGACGAGGAGGGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTC CTCCTCATCCGGGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTA CAAGTACCGGAAGGCCATCCTCTACCTGGTGGAGCGGCACGCCACGACCATCGTCGTCGG CGAGACCGGCAGCGGAAAGTCCACGCAGATCCCTCAGTACCTTAAAGAGGCTGGATGGGC CGAGGGTGGTCGACTTATAGGCTGCACTCAACCAAGACGATTGGCCGTGCAGTCAGTTGC ATCAAGAGTAGCGGAAGAAGTAGGTGTGAGACTCGGAGAAGAAGTTGGTTACACAATCCG ATTTGAGGATCAAACAAATCCAGGTATGACCATGATTAAATTTCTGACAGATGGGGTATT GATCAGAGAAATGATGGAAGATCCTCTTCTGACCAAGTATAGTGTAATTATGGTTGATGA AGCCCATGAACGATCCATTTCAACTGACATGTTGCTGGGTCTTCTGAAAAAGATTCAACG ACGTCGGCCCGACTTGCGTCTAATCATATCCTCTGCAACAATTGAAGCAAGATCCATGTC AACTTTTTTCAACATTAGGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAA CCCAGAACCTGCTATTCTTTCTGTGGAAGGTAAAGGTTACACAGTGGAAATCCATTATGT TGAAGAACCTGTTTCAGACTACTTACAGGCTGCTGTGAATACTGTACTTATTATTCACGA AAAGGAACCACCAGGGGATATTTTGGTATTTTTAACTGGCCAGGATGACATAGACGCAGC TGTTAAGATGCTAAATGAAGAAATTCAACACCGTGGAAGACATTATTTAGACCTGCTGAT TCTGCCCTTGTACTCTGGCCTTCCGCGGGGAGATCAAGACCTCATTTTTACTCCAACTTC AAAAGGTAAAAGGAAGGTTGTGATATCAACAAACATTGCTGAGACGTCATTAACTCTAGA GGGCGTGGTGTATGTTGTTGATAGTGGGTTTTCCAAGCAGAAGTGTTACAATCCGATTTC TGATATCGAGAGTTTAGTTGTCGCACCAATATCCAAGGCATCCGCAAGACAAAGAGCAGG CCGAGCTGGAAGGGTGCGACCAGGAAAGTGCTTTAGGCTTTATACAGAGGAATTTTACCT TAAAGAAATGCAGCCAGAAGGGATTCCTGAAATGCAAAGGTCTAACCTTGTTTCCTGCAT AACACAGTTGAAAGCTCTAGGAATAGACAACATTTTGGGATTTGATTGGCCAGCTTCTCC ATCACCAGAGGCAATGATTCGAGCTCTTGAAGTTCTATATTCCCTGGGAATCCTTGATGA AGATGCCAAACTAACAGTACCCCTTGGCTTCCAAGTTGCTGAGATCCCTCTGGACCCTAT GATTTCAAAAATGATCCTTTCAGCCAATAATTTCGGATGCTCTGATGAGATATTGACCAT AGCAGCATTTCTATCTGTTCAATCTGTGTGGGTTTCCATGAGAGGAGTGAAAAAAGAGTT TGATGAAGCTAAGCTCCGTTTTGCTGCTGCTGAGGGAGATCATGTGACGTTCCTGAATAT CTACAAAGGATTTCATCAATCTGGAAAATCTAGTCAGTGGTGTTACAAGAACTTTTTGAA CCACCAAGCATTGAAGAAGGTTATTGACATCAGGGAGCAGCTTGTCAGGATTATCAAGAG GTTTGGCATACCACTAACATCATGTGATAGAGATATGGAGGCAGTAAGAAAAGCTATTAT TGCTGGTGCATTTGCTTATGCATGCCATCTAGAGGAATACAGCCAGAATGGGATGTACAA AACAATAAGGACCTCACAAGAAGTTTATATTCATCCTTCTTCTGTGCTATTTAGGGTTAA TCCAAAGTGGGTCATCTACCAGTCTCTAGTTTCAACTGATAAGCACTATATGCGTAATGT TATTGCCATTGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGAC ACCCAATCCTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTT TTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTT TTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCT TTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGA TAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATA TTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTG TCAGAGAGGAATTATTTCTGTTAATGACAATCACTGTTACCCTGCGTCATGGTATATGC