Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0209400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:5934586:5939516:-1 gene:Os01g0209400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0209400-01)
Sequence

ATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCG
GCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCC
AAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCC
AGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAAC
GGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATAC
CTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGC
ATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCT
GATATATTTGCTAACTGTGGGCAAGTCGTTGACTGCAGAATCTGTGGTGATCCACACTCA
GTTCTAAGGTTTGCATTCATTGAGTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAAC
CTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATA
TTGCCTGTGAATCCAAAGTTCCTTCCTAGGACGGAGGATGAGAAGGAAATGGTCATAAGA
ACTGTTTATTGTACAAACATAGATAAGAAGGTTACTCAATTAGATGTAAAGAATTTCTTT
GAAGAACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACA
AGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGT
GGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCA
CGTTTAAATCGAGTGGCGTCGAACTGA

Peptide Sequence

PEP ID

Os01t0209400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:5934586:5939516:-1 gene:Os01g0209400 transcript:Os01t0209400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0209400-01)
Sequence

MAAVAGGSRAAPPADSAAVAAVAKEAEYQKGVQKLVDLLSKLNPAAKEFVPSSAAVSSPS
RKALSADAPVFDYNSIGGWNGGGKESGADAYQQRRRRNGYLSQGRRRMNERARHADREDS
IRRTVYVSDIDHTVTEERLADIFANCGQVVDCRICGDPHSVLRFAFIEFADEEGARTALN
LGGTMLGFYPVRVLPSKTAILPVNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFF
EELCGEVSRLRLLGDNVHSTRIAFVEFVHAECAIMALNCSGMILGTLPVRVSPSKTPVKP
RLNRVASN

Transcript Sequence

Transcript ID

Os01t0209400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5934586:5939516:-1 gene:Os01g0209400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0209400-01)
Sequence

AAAAAAAAATGGCCAAAACCTTGTAAAAAGCAAAACCCACTCGCCACTAATCGACGCCAT
TGGCGAGAGCTCGAGCGCGCAACACCACCACGCGGTAGCCTCCCCCAACCTCCACCTCCT
CCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAG
AGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCC
GTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGG
CTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGG
GCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCC
CCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGT
TCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCT
ACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGA
GAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTG
ACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTG
ACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTG
ATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTG
TTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGA
CGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGG
TTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGA
GACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCG
AGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGG
TGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGC
TTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCG
ATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAA
CTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATC
ATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTT
TTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTT
AGTCTTCACTTGAGGACAATCTCAGTGTCGTTT