Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0208700-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:5899561:5909560:1 gene:Os01g0208700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEP carboxylase 2, Phosphoenolpyruvate carboxylase 2, phosphoenolpyruvate carboxylase 4, PEPCase 4 description:Similar to Phosphoenolpyruvate carboxylase (Fragment). (Os01t0208700-01)
Sequence	ATGATCTCCCTCCACTCCGCCCCCTTCACCCTCCTCGTAAAGCTCCCCGGCCGGAGGAGG AGCGGTCTTACGCCGCCGAGGTGCGCCGTCCGGGGAGCCGGGAACGTGTCGTCGGCGGCG GTGCGGGAGATGGCGGTCGCGGAGGGGCGGCGGCAGCATGAGTACTCCATCGACGCACGC CTCCGGCAGCTCGCGCCGGAGAAGGTGTCCGCCGACGACCGCCTCGTCGACTACGAGACC CTCCTCGTCGCGCGCTTCCTCGACATCCTCGAGGACCTCCACGGCGGCGACTTCAGACAA GTGGTGGAGGATTGCCTGAGGCTGTCCGGGGAGTACCAGAGCGAGGGCGACCCGGCGAGG CTGGGCGAGCTGGGCGGCCTCCTGACGAGCCTGGACGTGGGCGACGCCATCATGGTGGCG AGCTCCTTCTCCCACATGCTCAACCTGGCCAACCTCGCCGAGGAGATCCAGATGGTGTAC CGCAAGAAGGCGGAGGCGAGCCGGCGCGGGGACTTCGTCGACGAGGCCTCCGCGCCCACC GAGTCCGACATCGACGAGACGTTCCAGCGCCTCGTCCGCGGCCTTGGCAAGTCCCCCCGC GAGGTGTTCGATGCGCTCCGCAGCCAGACCATCGACCTCGTCCTCACCGCCCACCCCACG CAGTCCGTCAGGCGTTCACTCCTCCAGAAGCACGCAAGCATTAGGAGCTGCCTGACACAG CTCTGCGGCGAGGGCATCTCCGACAACGAGGAGCAGGAGATCGACGAGGCCCTTCAGAGA GAGATTCTCGCGGCGTTCAAGACGGACGAGATCCGGCGGACGCCGCCGACGCCGCAGGAC GAGATGCGCGCCGGGATGAGCTACTTCCACGACACCATCTGGAACGGCGTGCCCAAGTTC CTCCGGCGCGTCGACACAGCGCTCAAGAACATCGGCATCGACGAGCGCCTCCCCTACAAC GCCCCCCTCATCCAGTTCTCCTCATGGATGGGCGGCGATCGCGACGGGAATCCGAGGGTT ACACCAGAGGTTACCAGGGACGTGTGCCTGCTTGCCAGGATGATGGCTGCCAACATGTAC TTCTCCAAGATGGCCGATTTGATGTTCGAGCTCTCCATGTGGCGCTGCAACGACGAGCTC CGAGCTCGTGCCAACGAGTTGCACCGGAAGTCCTCAAGGAAGTACGCCAAATACTACATT GAGTTTTGGAAGAAGATTTCTCCAGGAGAACCTTACCGCATTATACTCGGCGATGTGAGG GACAAGCTGTACAACACCTGCGAGCGTGCTCGCCAGATCTTGTCGAAGGGAATTTCTAGC ATTCCTGAAGACCAGACTTACACCAATGTCGAGCAGTTCTTGGAGCCGCTTGAGCTGTGC TACCGATCGCTGTGCGACTGCGGCGACAAGCTGATCGCCGACGGCAGACTGCTCGACTTA ATGCGGCAGGTCTCCACCTTCGGCCTCTCCCTCGTCAAGCTCGACATCCGGCAGGAGTCG GAGCGCCACACCGACGCCATGGACGCGATCACCACGCACCTCGGCATCGGCTCCTACCGG GAGTGGCCCGAGGAGCGGCGCCAGGAGTGGCTCGTCTCCGAGCTCCGCGGCAGGCGCCCG CTCTTCGGCCCCGACCTGCCGCAGTCCGAGGAGGTCGCCGACGTGCTCGGCGCGTTCCGG GTCATCGCCGAGCTCCCCGCCGACAGCTTCGGCGCGTACATTATCTCCATGGCCACCGCG CCGTCCGACGTGCTCGCCGTCGAGCTGCTGCAGCGGGAGTGCGGCGTCAAGAAGCCCCTG AGGGTCGTCCCGCTGTTCGAGAAGCTCGCCGACCTTCAGCAGGCGCGCGCCACCATGGAG CTCCTCTTCTCCGTCGACTGGTACAAGGAGCGGATCGACGGGAAGCAGGAGATCATGATC GGGTACTCCGACTCCGGCAAGGACGCCGGCCGGCTGTCCGCGGCGTGGCAGCTGTACAAG GCCCAGGAGGAGATCGTCGGCGTGGCGGAGCGGCACGGCGTGAAGCTGACCATCTTCCAC GGCCGGGGCGGCACCGTGGGGCGCGGCGGCGGGCCGAGCCACCTCGCCATCCTGTCCCAG CCGCCGAACACCGTCAATGGCTCGCTCCGCGTGACTGTCCAGGGCGAGGTCATCGAGAAG TCGTTCGGCGAGGAGAACCTCTGCTTCCGGACGCTGCAGAGGTTCACGGCGGCGACCCTG GAGCACGGCATGAACCCGCCGGTGTCCCCGAAGCCCGAGTGGCGCCGCCTGCTCGACGAC ATGGCGACGGTGGCCACTGACGAGTACCGCTCCATCGTGTTCCAGGAGCCGCGCTTCGTG GAGTACTTCCGCGCCGCCACGCCGGAGACGGAGTACGGGCGGATGAACATCGGCAGCCGG CCGTCGAAGCGGAAGCCCGGCGGCGGCATCGAGTCGCTGCGCGCCATCCCGTGGATCTTC GCGTGGACGCAGACGCGGTTCCACCTCCCCGTGTGGCTGGGCTTCGGCGCCGCGTTCAGG CACGCCATGCAGCAGAGCGACGCCGGCGGCGGCCTCGCCACGCTCCGCGAGATGTACGAC GAGTGGCCCTTCTTCCGCGTCACCATCGACCTCCTCGAGATGGTCTTCGCCAAGGGCGAC CCCGGCATCGCCGCACTCTACGACGAGCTCCTCGTCCCCGACGACCTACGTCCATTCGGC GAGCAGCTCAGAGCCAACTACGTCGAGACACAGCGCCTGCTCCTGCAAGTTGCTGGGCAC AAGGATCTCCTGGAGAGTGATCCGTACCTGAGGCAGCGGCTGATGCTGCGGGACTCGTAC ATCACGGCGCTGAACGTGTGCCAGGCGTACACGCTGAAGCGGATCCGGGACGGCGGGTTC AGGCCGGAGACGCGGCCGCCGCTGTCGAAGGAGCTTCTGGGCTCGTCGGCGGTGGCGGAG AAGCTGGTGAAGCTCAACCCAAACAGCGAGTACGACCCCGGGCTGGAGGACACGCTCATC CTCACCATGAAGGGCATCGCCGCCGGCATGCAGAACACGGGCTGA

Peptide Sequence

PEP ID	Os01t0208700-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:5899561:5909560:1 gene:Os01g0208700 transcript:Os01t0208700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEP carboxylase 2, Phosphoenolpyruvate carboxylase 2, phosphoenolpyruvate carboxylase 4, PEPCase 4 description:Similar to Phosphoenolpyruvate carboxylase (Fragment). (Os01t0208700-01)
Sequence	MISLHSAPFTLLVKLPGRRRSGLTPPRCAVRGAGNVSSAAVREMAVAEGRRQHEYSIDAR LRQLAPEKVSADDRLVDYETLLVARFLDILEDLHGGDFRQVVEDCLRLSGEYQSEGDPAR LGELGGLLTSLDVGDAIMVASSFSHMLNLANLAEEIQMVYRKKAEASRRGDFVDEASAPT ESDIDETFQRLVRGLGKSPREVFDALRSQTIDLVLTAHPTQSVRRSLLQKHASIRSCLTQ LCGEGISDNEEQEIDEALQREILAAFKTDEIRRTPPTPQDEMRAGMSYFHDTIWNGVPKF LRRVDTALKNIGIDERLPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMY FSKMADLMFELSMWRCNDELRARANELHRKSSRKYAKYYIEFWKKISPGEPYRIILGDVR DKLYNTCERARQILSKGISSIPEDQTYTNVEQFLEPLELCYRSLCDCGDKLIADGRLLDL MRQVSTFGLSLVKLDIRQESERHTDAMDAITTHLGIGSYREWPEERRQEWLVSELRGRRP LFGPDLPQSEEVADVLGAFRVIAELPADSFGAYIISMATAPSDVLAVELLQRECGVKKPL RVVPLFEKLADLQQARATMELLFSVDWYKERIDGKQEIMIGYSDSGKDAGRLSAAWQLYK AQEEIVGVAERHGVKLTIFHGRGGTVGRGGGPSHLAILSQPPNTVNGSLRVTVQGEVIEK SFGEENLCFRTLQRFTAATLEHGMNPPVSPKPEWRRLLDDMATVATDEYRSIVFQEPRFV EYFRAATPETEYGRMNIGSRPSKRKPGGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFR HAMQQSDAGGGLATLREMYDEWPFFRVTIDLLEMVFAKGDPGIAALYDELLVPDDLRPFG EQLRANYVETQRLLLQVAGHKDLLESDPYLRQRLMLRDSYITALNVCQAYTLKRIRDGGF RPETRPPLSKELLGSSAVAEKLVKLNPNSEYDPGLEDTLILTMKGIAAGMQNTG

Transcript Sequence

Transcript ID	Os01t0208700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:5899561:5909560:1 gene:Os01g0208700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEP carboxylase 2, Phosphoenolpyruvate carboxylase 2, phosphoenolpyruvate carboxylase 4, PEPCase 4 description:Similar to Phosphoenolpyruvate carboxylase (Fragment). (Os01t0208700-01)
Sequence	AGCAGCCGGTGACACCACAAAATCCTCTCGCGCTCTCGCTCGCGTCTCCTCCCCCTCCCC CACTCCAACGCTTTAAAAAAACCGGGGGAAATGGCGTGCCCGCGCCTACGCCTCGCCGTG CAGCCGCGCGCGCGGTATAAATTCGCACGCGAGCCGCGATGATCTCCCTCCACTCCGCCC CCTTCACCCTCCTCGTAAAGCTCCCCGGCCGGAGGAGGAGCGGTCTTACGCCGCCGAGGT GCGCCGTCCGGGGAGCCGGGAACGTGTCGTCGGCGGCGGTGCGGGAGATGGCGGTCGCGG AGGGGCGGCGGCAGCATGAGTACTCCATCGACGCACGCCTCCGGCAGCTCGCGCCGGAGA AGGTGTCCGCCGACGACCGCCTCGTCGACTACGAGACCCTCCTCGTCGCGCGCTTCCTCG ACATCCTCGAGGACCTCCACGGCGGCGACTTCAGACAAGTGGTGGAGGATTGCCTGAGGC TGTCCGGGGAGTACCAGAGCGAGGGCGACCCGGCGAGGCTGGGCGAGCTGGGCGGCCTCC TGACGAGCCTGGACGTGGGCGACGCCATCATGGTGGCGAGCTCCTTCTCCCACATGCTCA ACCTGGCCAACCTCGCCGAGGAGATCCAGATGGTGTACCGCAAGAAGGCGGAGGCGAGCC GGCGCGGGGACTTCGTCGACGAGGCCTCCGCGCCCACCGAGTCCGACATCGACGAGACGT TCCAGCGCCTCGTCCGCGGCCTTGGCAAGTCCCCCCGCGAGGTGTTCGATGCGCTCCGCA GCCAGACCATCGACCTCGTCCTCACCGCCCACCCCACGCAGTCCGTCAGGCGTTCACTCC TCCAGAAGCACGCAAGCATTAGGAGCTGCCTGACACAGCTCTGCGGCGAGGGCATCTCCG ACAACGAGGAGCAGGAGATCGACGAGGCCCTTCAGAGAGAGATTCTCGCGGCGTTCAAGA CGGACGAGATCCGGCGGACGCCGCCGACGCCGCAGGACGAGATGCGCGCCGGGATGAGCT ACTTCCACGACACCATCTGGAACGGCGTGCCCAAGTTCCTCCGGCGCGTCGACACAGCGC TCAAGAACATCGGCATCGACGAGCGCCTCCCCTACAACGCCCCCCTCATCCAGTTCTCCT CATGGATGGGCGGCGATCGCGACGGGAATCCGAGGGTTACACCAGAGGTTACCAGGGACG TGTGCCTGCTTGCCAGGATGATGGCTGCCAACATGTACTTCTCCAAGATGGCCGATTTGA TGTTCGAGCTCTCCATGTGGCGCTGCAACGACGAGCTCCGAGCTCGTGCCAACGAGTTGC ACCGGAAGTCCTCAAGGAAGTACGCCAAATACTACATTGAGTTTTGGAAGAAGATTTCTC CAGGAGAACCTTACCGCATTATACTCGGCGATGTGAGGGACAAGCTGTACAACACCTGCG AGCGTGCTCGCCAGATCTTGTCGAAGGGAATTTCTAGCATTCCTGAAGACCAGACTTACA CCAATGTCGAGCAGTTCTTGGAGCCGCTTGAGCTGTGCTACCGATCGCTGTGCGACTGCG GCGACAAGCTGATCGCCGACGGCAGACTGCTCGACTTAATGCGGCAGGTCTCCACCTTCG GCCTCTCCCTCGTCAAGCTCGACATCCGGCAGGAGTCGGAGCGCCACACCGACGCCATGG ACGCGATCACCACGCACCTCGGCATCGGCTCCTACCGGGAGTGGCCCGAGGAGCGGCGCC AGGAGTGGCTCGTCTCCGAGCTCCGCGGCAGGCGCCCGCTCTTCGGCCCCGACCTGCCGC AGTCCGAGGAGGTCGCCGACGTGCTCGGCGCGTTCCGGGTCATCGCCGAGCTCCCCGCCG ACAGCTTCGGCGCGTACATTATCTCCATGGCCACCGCGCCGTCCGACGTGCTCGCCGTCG AGCTGCTGCAGCGGGAGTGCGGCGTCAAGAAGCCCCTGAGGGTCGTCCCGCTGTTCGAGA AGCTCGCCGACCTTCAGCAGGCGCGCGCCACCATGGAGCTCCTCTTCTCCGTCGACTGGT ACAAGGAGCGGATCGACGGGAAGCAGGAGATCATGATCGGGTACTCCGACTCCGGCAAGG ACGCCGGCCGGCTGTCCGCGGCGTGGCAGCTGTACAAGGCCCAGGAGGAGATCGTCGGCG TGGCGGAGCGGCACGGCGTGAAGCTGACCATCTTCCACGGCCGGGGCGGCACCGTGGGGC GCGGCGGCGGGCCGAGCCACCTCGCCATCCTGTCCCAGCCGCCGAACACCGTCAATGGCT CGCTCCGCGTGACTGTCCAGGGCGAGGTCATCGAGAAGTCGTTCGGCGAGGAGAACCTCT GCTTCCGGACGCTGCAGAGGTTCACGGCGGCGACCCTGGAGCACGGCATGAACCCGCCGG TGTCCCCGAAGCCCGAGTGGCGCCGCCTGCTCGACGACATGGCGACGGTGGCCACTGACG AGTACCGCTCCATCGTGTTCCAGGAGCCGCGCTTCGTGGAGTACTTCCGCGCCGCCACGC CGGAGACGGAGTACGGGCGGATGAACATCGGCAGCCGGCCGTCGAAGCGGAAGCCCGGCG GCGGCATCGAGTCGCTGCGCGCCATCCCGTGGATCTTCGCGTGGACGCAGACGCGGTTCC ACCTCCCCGTGTGGCTGGGCTTCGGCGCCGCGTTCAGGCACGCCATGCAGCAGAGCGACG CCGGCGGCGGCCTCGCCACGCTCCGCGAGATGTACGACGAGTGGCCCTTCTTCCGCGTCA CCATCGACCTCCTCGAGATGGTCTTCGCCAAGGGCGACCCCGGCATCGCCGCACTCTACG ACGAGCTCCTCGTCCCCGACGACCTACGTCCATTCGGCGAGCAGCTCAGAGCCAACTACG TCGAGACACAGCGCCTGCTCCTGCAAGTTGCTGGGCACAAGGATCTCCTGGAGAGTGATC CGTACCTGAGGCAGCGGCTGATGCTGCGGGACTCGTACATCACGGCGCTGAACGTGTGCC AGGCGTACACGCTGAAGCGGATCCGGGACGGCGGGTTCAGGCCGGAGACGCGGCCGCCGC TGTCGAAGGAGCTTCTGGGCTCGTCGGCGGTGGCGGAGAAGCTGGTGAAGCTCAACCCAA ACAGCGAGTACGACCCCGGGCTGGAGGACACGCTCATCCTCACCATGAAGGGCATCGCCG CCGGCATGCAGAACACGGGCTGATCGATGCAAAAGCACCATGGCCTTGCCGGTTAAAACT TTGTAGAGAAGATTGGTGGGAGTGGATTGAGACTGTAAATTGGTGTTGCTGACTTGTTTC TGGTGCTTATTGGGTCAAGAACAGATCGTACTGTTCTTGTTTCTTCAGTTATCTCTGTTT TTTAGCAGTGATGGTACACGGATTTCCTGGTTCTAGCTTGAACCGTGATCACTGTTTTCT TTCAGTAACGTAGCAGATTAACCTGGAGTGGGGATATACCTGAGAATTCAGCTTCCCAAG CATATCTTTTTTTG