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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0205500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:5770062:5772270:1 gene:Os01g0205500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2. (Os01t0205500-01)
Sequence

ATGGCGTCGGAGAAGAAGCAGGCGAACCCGATGCGGGAGATCAAGGTGCAGAAGCTTGTC
CTCAACATCTCCGTCGGCGAGAGCGGAGATCGCCTCACCCGCGCCTCGAAGGTGCTGGAG
CAGCTGAGTGGGCAGTCACCGGTGTTCTCCAAGGCGAGGTACACTGTGAGGTCGTTCGGC
ATCCGGCGTAATGAGAAGATCGCGTGCTACGTGACAGTGCGTGGTGAGAAGGCAATGCAG
CTCCTGGAGAGTGGCCTGAAGGTGAAGGAGTACGAGCTGCTGAGGAGGAACTTCAGTGAG
ACTGGATGCTTTGGTTTTGGTATCCAGGAGCACATTGATCTTGGCATCAAGTATGACCCA
TCCACTGGTATTTACGGTATGGACTTCTACGTCGTTCTTGAGCGTGCTGGGTACCGTGTT
GCGCGGCGCCGTAGGTGCAAGTCCCGTGTTGGTATCCAGCACAGGGTCACCAAGGAGGAT
GCCATGAAGTGGTTCCAGGTCAAGTACGAGGGTGTCATCCTCAACAAGGCCCAAGCCAAC
ACCTCCTAA

Peptide Sequence

PEP ID

Os01t0205500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:5770062:5772270:1 gene:Os01g0205500 transcript:Os01t0205500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2. (Os01t0205500-01)
Sequence

MASEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG
IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP
STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN
TS

Transcript Sequence

Transcript ID

Os01t0205500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5770062:5772270:1 gene:Os01g0205500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2. (Os01t0205500-01)
Sequence

CTTCCCCGCCGCCGCCCGAGCAACACTAAACCCCCCATCTCCGCCGCTCCCGCCTCCCCC
TCGCCGCCGCCGCCTCCCAGATCTCGCCATGGCGTCGGAGAAGAAGCAGGCGAACCCGAT
GCGGGAGATCAAGGTGCAGAAGCTTGTCCTCAACATCTCCGTCGGCGAGAGCGGAGATCG
CCTCACCCGCGCCTCGAAGGTGCTGGAGCAGCTGAGTGGGCAGTCACCGGTGTTCTCCAA
GGCGAGGTACACTGTGAGGTCGTTCGGCATCCGGCGTAATGAGAAGATCGCGTGCTACGT
GACAGTGCGTGGTGAGAAGGCAATGCAGCTCCTGGAGAGTGGCCTGAAGGTGAAGGAGTA
CGAGCTGCTGAGGAGGAACTTCAGTGAGACTGGATGCTTTGGTTTTGGTATCCAGGAGCA
CATTGATCTTGGCATCAAGTATGACCCATCCACTGGTATTTACGGTATGGACTTCTACGT
CGTTCTTGAGCGTGCTGGGTACCGTGTTGCGCGGCGCCGTAGGTGCAAGTCCCGTGTTGG
TATCCAGCACAGGGTCACCAAGGAGGATGCCATGAAGTGGTTCCAGGTCAAGTACGAGGG
TGTCATCCTCAACAAGGCCCAAGCCAACACCTCCTAAGCGTCACTAGTGCCTAGTTCTCT
TTAGAACTTGAGTTATTTGGATGTTGGATTTGTATGCTTCTTAAAACTAAAGATGTTTTG
TTATTTTGTCAACTTTGAGTTGGATCAGTTTTGGTGGTATGTACTTTCATCTTAATGCTC
AGATCTATTTACTCTCTTAGCAGAGATAGATATATGATTTGACATATGCTACGAACTGCT
GTCAATGTTGATAAAATGAAAAGAGAATGGTTT