Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0201400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:5540631:5541520:-1 gene:Os01g0201400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 3 description:Rapid ALkalinization Factor family protein. (Os01t0201400-01)
Sequence

ATGGCGCCGCCTCTCCTCCGCGGCGTGCCCGTGCTGATCGCGCTCGTCGTCATGGCGGCG
GTGGCCTTGCTCCCGGCCGCGGCCGCCGACGACATGGGCGGCGTGGTGGCGTCGGCGTCG
GGGCGGAGGAAGATGGCGGCGGCGGCGGCGACGTGCGACGGCGCCGTGGGGGAGTGCGAC
GTGGACGACGAGGAGGAGGTGGAGGAGATGGCGCTGATGGGGGCGGCGGGCGCCGCCTCC
GGGGAGACGCTGATGCGGCGGTCGCTGGCGGCGCGGCGGCCGACGAACAGGTACGTGAGC
TACGCGGCGCTGGACGCCAACAAGGTGCCGTGCAACAAGCGCGGCCAGTCCTACTACCAG
AACTGCGCCTCGCAGAAGGCCGCCAACCCCTACCGCCGCGGCTGCTCTGCCATCACCCGA
TGCGCTCGCAATACCAACTGA

Peptide Sequence

PEP ID

Os01t0201400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:5540631:5541520:-1 gene:Os01g0201400 transcript:Os01t0201400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 3 description:Rapid ALkalinization Factor family protein. (Os01t0201400-01)
Sequence

MAPPLLRGVPVLIALVVMAAVALLPAAAADDMGGVVASASGRRKMAAAAATCDGAVGECD
VDDEEEVEEMALMGAAGAASGETLMRRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQ
NCASQKAANPYRRGCSAITRCARNTN

Transcript Sequence

Transcript ID

Os01t0201400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5540631:5541520:-1 gene:Os01g0201400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 3 description:Rapid ALkalinization Factor family protein. (Os01t0201400-01)
Sequence

GCGTACATCGCGCGCGGAGGGAGATCGATCGTTCGTTCGTCCTACTCGTATCCATCGATC
GGAAGAATCCCAGTCGCCGGCGCCCAAGAAACACACCGAACGCTCAGGTGATCACAGGCA
TGGCGCCGCCTCTCCTCCGCGGCGTGCCCGTGCTGATCGCGCTCGTCGTCATGGCGGCGG
TGGCCTTGCTCCCGGCCGCGGCCGCCGACGACATGGGCGGCGTGGTGGCGTCGGCGTCGG
GGCGGAGGAAGATGGCGGCGGCGGCGGCGACGTGCGACGGCGCCGTGGGGGAGTGCGACG
TGGACGACGAGGAGGAGGTGGAGGAGATGGCGCTGATGGGGGCGGCGGGCGCCGCCTCCG
GGGAGACGCTGATGCGGCGGTCGCTGGCGGCGCGGCGGCCGACGAACAGGTACGTGAGCT
ACGCGGCGCTGGACGCCAACAAGGTGCCGTGCAACAAGCGCGGCCAGTCCTACTACCAGA
ACTGCGCCTCGCAGAAGGCCGCCAACCCCTACCGCCGCGGCTGCTCTGCCATCACCCGAT
GCGCTCGCAATACCAACTGATCATCTCCTCTTCCTCCGCCGTCGCCGCCGTCGTCGCCAT
CGCCGCCGGCGGCGGCGGCGGTGGCGGCGAATACGCTGCTGTCATAAGTGTATGTACATA
TCGACTCAATCCAAAGCGTATGTGATGAGCAACTGCTGCTGCTGCTGCTAAAAAATCTTC
AGTGCTAAAATATCTATACAAGTGGTAGCATGCATTCTATTATTTGTCATCATCGAATTA
ATTGCGTTTTCAAATGTTGGGGAAATATTTTTTTTGAAGAGAATGTACTGAGGATCAGTT
CATGCATGTTTCTCGGTTGCACTATTGAAAAAAGAGAGAATTTAAGCGGG