Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0200300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:5426582:5429390:-1 gene:Os01g0200300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 29 description:Similar to Homeobox-leucine zipper protein HOX29. (Os01t0200300-01)
Sequence

GTCGACGATGTTTGCATCTCTGTCAATTCATCCAAAGTGATCGGTTGCAATGCAACATTC
AGCAGTGGACTCCCTATTGTCAGTACCGGTGTTCTTTGTGCCAAGGCATCCATGCTGTTG
CAGGATGTCTCTCCTCCATCACTACTGCAATTTTTGCGCGAACACCGGTCACAGTGGGCC
GACAGCAATTTAGACGCATTCTTCGCCTCCACGATGAAACCAAACTTCTGCAATTTACCC
ATGTCCCGTCTTGGAGGATTCAGTGGTCAGGTCATACTTCCTTTAGCACACACGTTTGAA
CCTGAAGAGTTCCTGGAAGTTATCAAGCTAGGAAACGCCAGCAACTACCAAGATACACTG
GTGCACCGTGATCTGTTCCTCTTGCAGATGTACAATGGAGTAGAGGAGAGCAGTGCAGGA
ACATGTTCAGAGCTCATCTTTGCGCCCATCGACGCATCGTTCAGTGATGATTCCCCACTG
CTGCCTTCCGGTTTCCGCATCATCCCAATCGATTCTCCTCTCGACACGTCGAGCCCGAAC
TGCACGTTGGATCTCGCGTCCACGCTCGAAGCCGCGACGCCACGGAGCAGGATCAGCGGC
GTCAATGGCGGCGGCGGCGGCTGTGCTGCTGCTGCGGCGAGCTCTAGCTCCAAGGCGGTG
ATGACGATCGCGTTCCAGTTCGCGTTCGACGGCCACCTGCAGGACAGCGTGGCCGCCATG
GCGCGGCAGTACATGCGCAACATCATCTCGTCGGTGCAGAGGATCGCCGTGGCGCTCTCG
TCCTCCCGCCTCGTCCCTCCCGGCGCCGGCGCCGCCGCCGCGCAGCTCTCACCGGTGACT
CCGGAGGCGGCGACGCTGCCCAGATGGATTTGCCAGAGCTACAGATTTCATTTTGGAGAT
GAACTCATCAAATCTGTAGATGCAAACAGCAGCAATGAATCGATTCTGAAAGCAGTTTGG
CATCATCCGAGTGCCATACTCTGCTGCTCTCTCAAGGCGATGCCAGTGTTCACATTTGCA
AACCAGTCTGGCCTCGACATGCTCGAAACAACTCTGGTGGCGCTCCAAGACATGACGCTG
GAGAAAGTTTTCGACGATCAAGGGAGGAAGAACCTGTGCACAGAGCTCCCCAACATCATG
GAGCAGGGGATGGCGTGCATGGAGGGAGGGGTGTGCGTGTCGAGCGTTGGGAGGGCGGCG
TCGTACGAGAAGGCGGTGGCGTGGAAGGTGGTCGACGGCGACGGCGGCGGCGCCCACTGC
ATCTGCTTCATGTTCATCAACTGGACCTTCCTTTGA

Peptide Sequence

PEP ID

Os01t0200300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:5426582:5429390:-1 gene:Os01g0200300 transcript:Os01t0200300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 29 description:Similar to Homeobox-leucine zipper protein HOX29. (Os01t0200300-01)
Sequence

VDDVCISVNSSKVIGCNATFSSGLPIVSTGVLCAKASMLLQDVSPPSLLQFLREHRSQWA
DSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAHTFEPEEFLEVIKLGNASNYQDTL
VHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPLDTSSPN
CTLDLASTLEAATPRSRISGVNGGGGGCAAAAASSSSKAVMTIAFQFAFDGHLQDSVAAM
ARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLSPVTPEAATLPRWICQSYRFHFGD
ELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTL
EKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHC
ICFMFINWTFL

Transcript Sequence

Transcript ID

Os01t0200300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5426582:5429390:-1 gene:Os01g0200300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 29 description:Similar to Homeobox-leucine zipper protein HOX29. (Os01t0200300-01)
Sequence

GCGTCGACGATGTTTGCATCTCTGTCAATTCATCCAAAGTGATCGGTTGCAATGCAACAT
TCAGCAGTGGACTCCCTATTGTCAGTACCGGTGTTCTTTGTGCCAAGGCATCCATGCTGT
TGCAGGATGTCTCTCCTCCATCACTACTGCAATTTTTGCGCGAACACCGGTCACAGTGGG
CCGACAGCAATTTAGACGCATTCTTCGCCTCCACGATGAAACCAAACTTCTGCAATTTAC
CCATGTCCCGTCTTGGAGGATTCAGTGGTCAGGTCATACTTCCTTTAGCACACACGTTTG
AACCTGAAGAGTTCCTGGAAGTTATCAAGCTAGGAAACGCCAGCAACTACCAAGATACAC
TGGTGCACCGTGATCTGTTCCTCTTGCAGATGTACAATGGAGTAGAGGAGAGCAGTGCAG
GAACATGTTCAGAGCTCATCTTTGCGCCCATCGACGCATCGTTCAGTGATGATTCCCCAC
TGCTGCCTTCCGGTTTCCGCATCATCCCAATCGATTCTCCTCTCGACACGTCGAGCCCGA
ACTGCACGTTGGATCTCGCGTCCACGCTCGAAGCCGCGACGCCACGGAGCAGGATCAGCG
GCGTCAATGGCGGCGGCGGCGGCTGTGCTGCTGCTGCGGCGAGCTCTAGCTCCAAGGCGG
TGATGACGATCGCGTTCCAGTTCGCGTTCGACGGCCACCTGCAGGACAGCGTGGCCGCCA
TGGCGCGGCAGTACATGCGCAACATCATCTCGTCGGTGCAGAGGATCGCCGTGGCGCTCT
CGTCCTCCCGCCTCGTCCCTCCCGGCGCCGGCGCCGCCGCCGCGCAGCTCTCACCGGTGA
CTCCGGAGGCGGCGACGCTGCCCAGATGGATTTGCCAGAGCTACAGATTTCATTTTGGAG
ATGAACTCATCAAATCTGTAGATGCAAACAGCAGCAATGAATCGATTCTGAAAGCAGTTT
GGCATCATCCGAGTGCCATACTCTGCTGCTCTCTCAAGGCGATGCCAGTGTTCACATTTG
CAAACCAGTCTGGCCTCGACATGCTCGAAACAACTCTGGTGGCGCTCCAAGACATGACGC
TGGAGAAAGTTTTCGACGATCAAGGGAGGAAGAACCTGTGCACAGAGCTCCCCAACATCA
TGGAGCAGGGGATGGCGTGCATGGAGGGAGGGGTGTGCGTGTCGAGCGTTGGGAGGGCGG
CGTCGTACGAGAAGGCGGTGGCGTGGAAGGTGGTCGACGGCGACGGCGGCGGCGCCCACT
GCATCTGCTTCATGTTCATCAACTGGACCTTCCTTTGATTTCATTTCATTATACACCCCA
ATGCAAAACGGATATATAATATTACAACTAGTGCAATTTACGTACGTAATCTCATGAAAC
AGCGTGTACAAATGTTTTGGATTTTGAGAACCGCGGTGCTAGTTTTTGT