Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0198900-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:5373712:5374663:1 gene:Os01g0198900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyketide cyclase/dehydrase domain containing protein. (Os01t0198900-01);Polyketide cyclase/dehydrase domain containing protein. (Os01t0198900-02)
Sequence

ATGGCGGCGACGGCGACGGCGACGGCGGCGCCGGAGGAGGAGGAGGGGAAGAGGGTGATG
ACGAGGGCGCTGGAGTGGGAAGGGTGCGTGGTGTCGCCGGTGCCGACGGCGACGGCCGAC
GAGGCGTGGGCTCTGCTGTCGGACTTCCTCGCCTTCCACCGCTGGCACCCGCGCGTCGCC
AAGTGCCGCCCCGCCTCGCCGTCGGCCGCGGCGAGCACGGCCGCCGCCCCGCCGGGCTCC
GTCGTGCGGTACTGCGAGGGCACGCCGCGCGGCGACGGGGCGCCGCCGGACTGGGCGCAC
GAGACGCTGCTCGAGCACGACGCCGCGCGCCGCTTCTTCCGCTACGAGATGAACGACAAC
AACATGGGCTTCGGCGTCTTCGTCGCCACGTTCCGCGTCGTCCCCGACGCTGGCGGCGGC
GACGCGGACGCGCCGGGGTGCGAGCTCCGGTGGGAGTTCGAGGGCGACCCCGTGCGCGGC
ACGCCCAAGGAGGCCCTCGTCGCGCGCCTGCAGGCCGGCCTCGACGGCATGGCGGCGCGC
GTGCAGGAGCACCTCATGTCCGCCCGCGCCGCCGACGCCGCCGTCATCGCCGCCGGCGGC
GTCGAGGCCGCCGACGAGCTCAACCGGGACAAATACTCTATCGCGGTCTGA

Peptide Sequence

PEP ID

Os01t0198900-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:5373712:5374663:1 gene:Os01g0198900 transcript:Os01t0198900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyketide cyclase/dehydrase domain containing protein. (Os01t0198900-01);Polyketide cyclase/dehydrase domain containing protein. (Os01t0198900-02)
Sequence

MAATATATAAPEEEEGKRVMTRALEWEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVA
KCRPASPSAAASTAAAPPGSVVRYCEGTPRGDGAPPDWAHETLLEHDAARRFFRYEMNDN
NMGFGVFVATFRVVPDAGGGDADAPGCELRWEFEGDPVRGTPKEALVARLQAGLDGMAAR
VQEHLMSARAADAAVIAAGGVEAADELNRDKYSIAV

Transcript Sequence

Transcript ID

Os01t0198900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5373712:5374663:1 gene:Os01g0198900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyketide cyclase/dehydrase domain containing protein. (Os01t0198900-01);Polyketide cyclase/dehydrase domain containing protein. (Os01t0198900-02)
Sequence

GATCGTGTACTCGTCGTAGCCACCACACCGCCCACACACCCACACCGCCGGTAGCGAGGC
AGCTCACATGGCGGCGACGGCGACGGCGACGGCGGCGCCGGAGGAGGAGGAGGGGAAGAG
GGTGATGACGAGGGCGCTGGAGTGGGAAGGGTGCGTGGTGTCGCCGGTGCCGACGGCGAC
GGCCGACGAGGCGTGGGCTCTGCTGTCGGACTTCCTCGCCTTCCACCGCTGGCACCCGCG
CGTCGCCAAGTGCCGCCCCGCCTCGCCGTCGGCCGCGGCGAGCACGGCCGCCGCCCCGCC
GGGCTCCGTCGTGCGGTACTGCGAGGGCACGCCGCGCGGCGACGGGGCGCCGCCGGACTG
GGCGCACGAGACGCTGCTCGAGCACGACGCCGCGCGCCGCTTCTTCCGCTACGAGATGAA
CGACAACAACATGGGCTTCGGCGTCTTCGTCGCCACGTTCCGCGTCGTCCCCGACGCTGG
CGGCGGCGACGCGGACGCGCCGGGGTGCGAGCTCCGGTGGGAGTTCGAGGGCGACCCCGT
GCGCGGCACGCCCAAGGAGGCCCTCGTCGCGCGCCTGCAGGCCGGCCTCGACGGCATGGC
GGCGCGCGTGCAGGAGCACCTCATGTCCGCCCGCGCCGCCGACGCCGCCGTCATCGCCGC
CGGCGGCGTCGAGGCCGCCGACGAGCTCAACCGGGACAAATACTCTATCGCGGTCTGAGT
GTTCGTCCGGTCCGTCGATCGATCGGTACAGTACACCAGTATATGCGCGGTTGCTGGTCA
ACTTTATACGTGAACTAATTTGGCTGCAAAAACGTATATTGTTCGATGAAAATACACGAA
CTCTGTCGCCGTCTTCCGTATATATGTACGTACCTACGTATACCTACCTACGTATACGGT
ATACTGTGTTTGTACGTGCTTGGGGTATGGGAATAAACGTTACTAAGTACTG