Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0197700-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:5270449:5275585:-1 gene:Os01g0197700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAIN NUMBER 1A description:Similar to Cytokinin dehydrogenase 2. (Os01t0197700-01)
Sequence	ATGAAGCAAGAGCAGGTCAGGATGGCAGTGCTCCTCATGCTCAACTGCTTCGTCAAGGCC ACGGCGCCGCCGCCATGGCCGCCGTCGGCTTCGTCCGCCTCCTTCCTCGACGACCTCGGC GACCTCGGCATCGCGCCGCTCATCCGCGCCGACGAGGCGGGCACCGCGCGCGCCTCCGCC GACTTTGGCAACCTCTCCGTCGCCGGCGTCGGGGCGCCTCGGCTCGCCGCCGCCGCCGCC GTGCTCTACCCGTCGCGCCCCGCCGACATCGCCGCGCTGCTGCGCGCGTCGTGCGCACGC CCGGCGCCGTTCGCGGTGTCCGCGCGGGGGTGTGGCCACTCGGTGCACGGCCAGGCCTCC GCGCCCGACGGCGTCGTCGTCGACATGGCGTCGCTCGGCCGCCTGCAGGGCGGCGGCGCG CGGCGCCTCGCCGTGTCAGTGGAGGGGCGGTACGTCGACGCCGGCGGCGAGCAGCTGTGG GTGGACGTGCTGCGCGCGTCCATGGCGCACGGGCTCACGCCGGTGTCGTGGACAGACTAC CTCCACCTCACCGTCGGCGGCACGCTGTCCAACGCCGGCATCAGCGGCCAGGCCTTCCGC CATGGCCCCCAGATTTCCAACGTGCTAGAGCTCGACGTCATCACCGGTGTCGGGGAGATG GTGACGTGCTCGAAGGAGAAGGCGCCGGACCTGTTCGACGCGGTGCTGGGCGGGCTGGGG CAGTTCGGCGTCATCACGCGGGCGCGCATCCCGCTCGCGCCGGCGCCGGCGAGGGCGCGG TGGGTGCGGTTCGTGTACACGACGGCGGCGGCGATGACGGCCGACCAGGAGCGCCTCATC GCCGTCGATCGCGCCGGCGGCGCCGGCGCGGTGGGCGGGCTGATGGACTACGTCGAGGGC TCGGTCCACCTGAACCAGGGCCTGGTCGAGACCTGGCGCACGCAGCCGCAGCCGCCTTCG CCGTCCTCCTCCTCCTCCTCATCCTTCTTCTCCGACGCCGACGAGGCCCGCGTCGCCGCG CTCGCCAAGGAGGCCGGCGGCGTGCTGTATTTCCTCGAGGGCGCCATCTACTTCGGCGGC GCCGCCGGGCCGTCCGCCGCCGACGTTGACAAGAGGATGGATGTGCTGCGTCGCGAGCTG CGGCACGAGCGCGGGTTCGTGTTCGCGCAGGACGTGGCGTACGCCGGGTTCCTGGACCGC GTCCACGACGGCGAGCTCAAGCTCCGCGCCGCGGGGCTCTGGGACGTGCCGCACCCATGG CTGAACCTGTTCCTCCCCCGCTCCGGCGTCCTCGCCTTCGCCGACGGCGTCTTCCACGGC ATCCTCAGCCGCACCCCCGCCATGGGCCCCGTCCTCATCTACCCCATGAACCGCAACAAG TGGGACAGTAACATGTCGGCAGTGATCACCGACGACGACGGTGACGAGGTGTTCTACACG GTGGGGATCCTGCGGTCGGCGGCGGCGGCCGGCGACGTGGGGAGGCTGGAGGAGCAGAAC GACGAGATCTTGGGTTTCTGCGAGGTGGCCGGGATAGCCTACAAGCAGTACCTGCCTTAC TACGGCAGCCAGGCAGAGTGGCAGAAGCGGCACTTCGGTGCCAATCTCTGGCCAAGATTC GTGCAGCGGAAGAGCAAGTATGATCCAAAGGCCATCCTGTCCCGTGGCCAGGGGATTTTC ACGTCACCACTCGCATGA

Peptide Sequence

PEP ID	Os01t0197700-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:5270449:5275585:-1 gene:Os01g0197700 transcript:Os01t0197700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAIN NUMBER 1A description:Similar to Cytokinin dehydrogenase 2. (Os01t0197700-01)
Sequence	MKQEQVRMAVLLMLNCFVKATAPPPWPPSASSASFLDDLGDLGIAPLIRADEAGTARASA DFGNLSVAGVGAPRLAAAAAVLYPSRPADIAALLRASCARPAPFAVSARGCGHSVHGQAS APDGVVVDMASLGRLQGGGARRLAVSVEGRYVDAGGEQLWVDVLRASMAHGLTPVSWTDY LHLTVGGTLSNAGISGQAFRHGPQISNVLELDVITGVGEMVTCSKEKAPDLFDAVLGGLG QFGVITRARIPLAPAPARARWVRFVYTTAAAMTADQERLIAVDRAGGAGAVGGLMDYVEG SVHLNQGLVETWRTQPQPPSPSSSSSSSFFSDADEARVAALAKEAGGVLYFLEGAIYFGG AAGPSAADVDKRMDVLRRELRHERGFVFAQDVAYAGFLDRVHDGELKLRAAGLWDVPHPW LNLFLPRSGVLAFADGVFHGILSRTPAMGPVLIYPMNRNKWDSNMSAVITDDDGDEVFYT VGILRSAAAAGDVGRLEEQNDEILGFCEVAGIAYKQYLPYYGSQAEWQKRHFGANLWPRF VQRKSKYDPKAILSRGQGIFTSPLA

Transcript Sequence

Transcript ID	Os01t0197700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:5270449:5275585:-1 gene:Os01g0197700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAIN NUMBER 1A description:Similar to Cytokinin dehydrogenase 2. (Os01t0197700-01)
Sequence	GCAAGAACACACAAATTCACACACACACTGACACACACAAACCGATCGATTGATTGATTG ATAATGAAGCAAGAGCAGGTCAGGATGGCAGTGCTCCTCATGCTCAACTGCTTCGTCAAG GCCACGGCGCCGCCGCCATGGCCGCCGTCGGCTTCGTCCGCCTCCTTCCTCGACGACCTC GGCGACCTCGGCATCGCGCCGCTCATCCGCGCCGACGAGGCGGGCACCGCGCGCGCCTCC GCCGACTTTGGCAACCTCTCCGTCGCCGGCGTCGGGGCGCCTCGGCTCGCCGCCGCCGCC GCCGTGCTCTACCCGTCGCGCCCCGCCGACATCGCCGCGCTGCTGCGCGCGTCGTGCGCA CGCCCGGCGCCGTTCGCGGTGTCCGCGCGGGGGTGTGGCCACTCGGTGCACGGCCAGGCC TCCGCGCCCGACGGCGTCGTCGTCGACATGGCGTCGCTCGGCCGCCTGCAGGGCGGCGGC GCGCGGCGCCTCGCCGTGTCAGTGGAGGGGCGGTACGTCGACGCCGGCGGCGAGCAGCTG TGGGTGGACGTGCTGCGCGCGTCCATGGCGCACGGGCTCACGCCGGTGTCGTGGACAGAC TACCTCCACCTCACCGTCGGCGGCACGCTGTCCAACGCCGGCATCAGCGGCCAGGCCTTC CGCCATGGCCCCCAGATTTCCAACGTGCTAGAGCTCGACGTCATCACCGGTGTCGGGGAG ATGGTGACGTGCTCGAAGGAGAAGGCGCCGGACCTGTTCGACGCGGTGCTGGGCGGGCTG GGGCAGTTCGGCGTCATCACGCGGGCGCGCATCCCGCTCGCGCCGGCGCCGGCGAGGGCG CGGTGGGTGCGGTTCGTGTACACGACGGCGGCGGCGATGACGGCCGACCAGGAGCGCCTC ATCGCCGTCGATCGCGCCGGCGGCGCCGGCGCGGTGGGCGGGCTGATGGACTACGTCGAG GGCTCGGTCCACCTGAACCAGGGCCTGGTCGAGACCTGGCGCACGCAGCCGCAGCCGCCT TCGCCGTCCTCCTCCTCCTCCTCATCCTTCTTCTCCGACGCCGACGAGGCCCGCGTCGCC GCGCTCGCCAAGGAGGCCGGCGGCGTGCTGTATTTCCTCGAGGGCGCCATCTACTTCGGC GGCGCCGCCGGGCCGTCCGCCGCCGACGTTGACAAGAGGATGGATGTGCTGCGTCGCGAG CTGCGGCACGAGCGCGGGTTCGTGTTCGCGCAGGACGTGGCGTACGCCGGGTTCCTGGAC CGCGTCCACGACGGCGAGCTCAAGCTCCGCGCCGCGGGGCTCTGGGACGTGCCGCACCCA TGGCTGAACCTGTTCCTCCCCCGCTCCGGCGTCCTCGCCTTCGCCGACGGCGTCTTCCAC GGCATCCTCAGCCGCACCCCCGCCATGGGCCCCGTCCTCATCTACCCCATGAACCGCAAC AAGTGGGACAGTAACATGTCGGCAGTGATCACCGACGACGACGGTGACGAGGTGTTCTAC ACGGTGGGGATCCTGCGGTCGGCGGCGGCGGCCGGCGACGTGGGGAGGCTGGAGGAGCAG AACGACGAGATCTTGGGTTTCTGCGAGGTGGCCGGGATAGCCTACAAGCAGTACCTGCCT TACTACGGCAGCCAGGCAGAGTGGCAGAAGCGGCACTTCGGTGCCAATCTCTGGCCAAGA TTCGTGCAGCGGAAGAGCAAGTATGATCCAAAGGCCATCCTGTCCCGTGGCCAGGGGATT TTCACGTCACCACTCGCATGAAATGACACATGTATGCAAATGCATATCTACATGCGTATA TATACACGTATATATACGTATGTATGCATACACATATGGGTGTACTGTGCATACGTTATA GCACACTGCAGCTAATTAAGCTTGACAGGGAGATCGATCAATGGACAATGCTCTAGTCAA GCTAATATAAATAATGGAGTAGTAGTATATATGTAGTGCGAGATAATTAAGTAGTGTGTT TGCCTACTAAAAGGAGAGGCAAAGTAGTACTGTGATGCATGCATGCCAACTAATAGGTGA TAAGTACGTGTGTGTGGCCGCATGTATGATTAGAAGAAGTTGGTTTTTAATTAATTAATT AGGTCATGTATGTAAATATATAGTACAGTACTACGTACTACTAGTGT