Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0196500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:5213979:5216701:-1 gene:Os01g0196500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Prenylated rab acceptor PRA1 family protein. (Os01t0196500-01)
Sequence

ATGTCGAAGTACGGCACAATCCCCACCTCCTCCTCCTCCTCCTCCTCGGGGGCCGCGCCG
CCGCCGCTCCCACTCGGTGGCGGCGGCGGGGCCTCCCCGCTCGACTTCTTCTCCCGCGCC
AAGGCCCGGGGCGCGACGGCGCTGGCCACGCGGCGGCCGTGGCGGGAGCTCGCGGACCCG
CACGCCCTGGGCCTGCCGCCGAGCCTCGCCGACGCCTACCTCCGGGTGCGCGCCAACCTC
GCCCACTACGCCATGAACTACGCCATCGTGGTCCTCGCCGTCGTCTTCCTCTCCCTCCTG
TGGCACCCGGCCTCCCTCATCGTGTTCCTCGTCTGCATGGTCGCATGGCTCGTCCTCTAC
TTCCTACGCGACGAGCCGATCGTGCTCTTCGGCCGCGTCGTCGGGGACGGCGCCGTGCTC
GCCGCCCTCGCCGCCGTCACGCTCGTCCTCCTCCTGCTCACCGGCGCCACCGCCAACATC
GTCTCCTCGCTGCTCATCGGGGTCCTGCTCGTTGTGCTGCACGCCGCGCTGCACAAGGCG
GAGGAGAACGTCGATGATGAGGTCGGCCGCTGGTACACGCCGGTGCCCCCGCAGCCGGCT
CACTAG

Peptide Sequence

PEP ID

Os01t0196500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:5213979:5216701:-1 gene:Os01g0196500 transcript:Os01t0196500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Prenylated rab acceptor PRA1 family protein. (Os01t0196500-01)
Sequence

MSKYGTIPTSSSSSSSGAAPPPLPLGGGGGASPLDFFSRAKARGATALATRRPWRELADP
HALGLPPSLADAYLRVRANLAHYAMNYAIVVLAVVFLSLLWHPASLIVFLVCMVAWLVLY
FLRDEPIVLFGRVVGDGAVLAALAAVTLVLLLLTGATANIVSSLLIGVLLVVLHAALHKA
EENVDDEVGRWYTPVPPQPAH

Transcript Sequence

Transcript ID

Os01t0196500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5213979:5216701:-1 gene:Os01g0196500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Prenylated rab acceptor PRA1 family protein. (Os01t0196500-01)
Sequence

TCATCTTCTTCCTCCCGATCCCCCCCTTCCCCTTCCCCTCCCGGATCCGACCCCCCGCCG
CCGCCGCCGACCATCTCCCATGTCGAAGTACGGCACAATCCCCACCTCCTCCTCCTCCTC
CTCCTCGGGGGCCGCGCCGCCGCCGCTCCCACTCGGTGGCGGCGGCGGGGCCTCCCCGCT
CGACTTCTTCTCCCGCGCCAAGGCCCGGGGCGCGACGGCGCTGGCCACGCGGCGGCCGTG
GCGGGAGCTCGCGGACCCGCACGCCCTGGGCCTGCCGCCGAGCCTCGCCGACGCCTACCT
CCGGGTGCGCGCCAACCTCGCCCACTACGCCATGAACTACGCCATCGTGGTCCTCGCCGT
CGTCTTCCTCTCCCTCCTGTGGCACCCGGCCTCCCTCATCGTGTTCCTCGTCTGCATGGT
CGCATGGCTCGTCCTCTACTTCCTACGCGACGAGCCGATCGTGCTCTTCGGCCGCGTCGT
CGGGGACGGCGCCGTGCTCGCCGCCCTCGCCGCCGTCACGCTCGTCCTCCTCCTGCTCAC
CGGCGCCACCGCCAACATCGTCTCCTCGCTGCTCATCGGGGTCCTGCTCGTTGTGCTGCA
CGCCGCGCTGCACAAGGCGGAGGAGAACGTCGATGATGAGGTCGGCCGCTGGTACACGCC
GGTGCCCCCGCAGCCGGCTCACTAGTTCGAGGATCTGAGTGTGTGATTCACGCAGAACTG
TGCTGTCACACTGCATTGTTTATTCGAGCCGTGTCAAGTGAGCATTGTTAAGTTCGGTCT
GGGGCCGGAAGAGCTTTTTCATTTCAGATGGCGACTGGGCGTGTTTCACGCGCTGCTGGC
TCCACAGGAAGTCTTGGATCCGATCCAGCGATGATCCAGGGCTGTGAATTGCAGCGAATC
CCTCTTGTTTATCCAACTTTTGTCAACGTTATGCAGCCTTTTCCCCTTGTTTTCATGTAC
CAAATTGGTAGAGAGAAAGTAAAAACTAGACTTGATTCAGGAGTTGAGAATCAATGCCCT
GTTACCTGTGTGTGATTTCTTTGTGCTCCATAATAACAACGATCTTGTCTCGC