Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0195000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:5099555:5102080:1 gene:Os01g0195000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:indeterminate domain 2 description:Zinc finger, C2H2-type domain containing protein. (Os01t0195000-01)
Sequence

ATGATGCTCAAGGATCTGGCCGAAATTCAGCAGCAGCAGCTGCTCGCCGCCGCCGAGGAG
AACATGTCGAACCTGACGTCGGCGTCCGGCGACCAGGCCAGCGTCTCGTCCCACCCCGCT
CCTCCTCCCGCCAAGAAGAAGCGCAGCCTCCCCGGCAACCCAGATCCTGAGGCGGAGGTG
ATCGCGCTGTCGCCGAGGACGCTGATGGCGACGAACAGGTACGTGTGCGAGATCTGCGGG
AAAGGGTTCCAGCGAGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCATGG
AAGCTGAAGCAGCGGAACCCCAAGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAG
GCCGGCTGCGTCCACCACGACCCGGCGCGCGCCCTCGGCGACCTCACCGGCATCAAGAAG
CACTTCAGCCGCAAGCATGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTAC
GCCGTCCACTCCGACTGGAAGGCCCACTCCAAGGTCTGCGGCACCCGCGAGTACCGCTGC
GATTGCGGCACCCTCTTCTCCCGGCGGGACAGCTTCATCACGCACAGGGCGTTCTGCGAC
GCGCTGGCGGAGGAGAGCGCGAGGGCGGTCACGGCGGCGGCGGCGGTGGCGGGGCAGCAG
CAGCATGGCGGCGGGATGCTCTTCTCGCAGGTGGCGGATGTGCTTGATCACCAGGCGGCG
ATGGCGATGGGGGGGCATGGGCTGATGCAAGAGCTGTGCCTCAAGAGGGAGCAGCAGCAG
CAGCAGCAGCAGTTCGCGCCGTCGTGGCTCACGGCGCAGCAGCAGCAGCAGCAGCTGGAG
GCGATGGCCGGCGCGGGGAATCCGGCGGCGATGTACGGGTCGGCGAGGCTGGACCAGGAG
TTCATCGGGAGCTCCACGCCGGAGAGCGGCGGCGCGCAGCAGGCCGGCCTCAGCTTCGGG
TTCTCGTCGACGTCATCCGCGCCGCCGCACCCCGCCGCCTCCTCGGCGCACATGTCCGCC
ACCGCGCTGCTGCAGAAGGCGGCGCAGATGGGCGCGACGCTGAGCCGCCCGTCGAGCCAC
GCCCACATGGCGGCGGCGGCGGCGGCGAGCACGCACAACAGCAGCAGCAGCGCCGCCACC
ACCAATGCTCCCCCTCCTCCTCCTACCAGCAACGTGTCGAGCACTTGCGTCGGCGCCGGC
GGCTACGGGCTCGCCTTCGAAGCGTCCCACTTCATCGCAGCAGACGAGAGCAGCAGGGGC
GCCAGGTCCGATCGTGACACCGGCAATGGCGTCGCCGGAGCCGGCAACGACGGCCTCACC
AGGGACTTCTTGGGTCTCCGAGCCTTCTCCCACGGCAACATAATGAGCATGGCCGGCTTC
GATCCCTGCATGTCGACGACGTCGGCGTCGTCGGCGGCGCCGTACGACCACCACCACCAC
AGCAACAAGCCATGGCATAGCTAG

Peptide Sequence

PEP ID

Os01t0195000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:5099555:5102080:1 gene:Os01g0195000 transcript:Os01t0195000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:indeterminate domain 2 description:Zinc finger, C2H2-type domain containing protein. (Os01t0195000-01)
Sequence

MMLKDLAEIQQQQLLAAAEENMSNLTSASGDQASVSSHPAPPPAKKKRSLPGNPDPEAEV
IALSPRTLMATNRYVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRNPKEVVRKKVYVCPE
AGCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVHSDWKAHSKVCGTREYRC
DCGTLFSRRDSFITHRAFCDALAEESARAVTAAAAVAGQQQHGGGMLFSQVADVLDHQAA
MAMGGHGLMQELCLKREQQQQQQQFAPSWLTAQQQQQQLEAMAGAGNPAAMYGSARLDQE
FIGSSTPESGGAQQAGLSFGFSSTSSAPPHPAASSAHMSATALLQKAAQMGATLSRPSSH
AHMAAAAAASTHNSSSSAATTNAPPPPPTSNVSSTCVGAGGYGLAFEASHFIAADESSRG
ARSDRDTGNGVAGAGNDGLTRDFLGLRAFSHGNIMSMAGFDPCMSTTSASSAAPYDHHHH
SNKPWHS

Transcript Sequence

Transcript ID

Os01t0195000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5099555:5102080:1 gene:Os01g0195000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:indeterminate domain 2 description:Zinc finger, C2H2-type domain containing protein. (Os01t0195000-01)
Sequence

ACACACACTTGCTCCTCATTCCTCTCTCCTCTCCTCTCCTCTCTCTCATCAACCCTAGCT
TGATAGTTGATTCAACCAGCCAATATATTCGATCTCCCCTTCTCTTCTTCTCTCGATCGA
TCGGGTGATGAGAAGCCAATTGAGAATTTGAGATCGTTCGATCATCACCTCGTTTCTTGC
TGAGATTATAGCCAAGCTCCATGATTCCGTCTATGCCGGTAGTGACACTGCAAGGTGCAC
ACCAGTAGATAGCTAGTGGCAGCAGCAGCAGCAGCATCAGTGGAGCTAGTCGTCGTCCCG
GCCGGCCTTGCCGTCAGAGATCGATCGGTGTAAGTTACAGGGTGCAAGTGCGATCGATCG
CCACCGGCGCAGCGAGATCTGATTGATATTGATCCATCGCCGATCGATTGATCATACGTT
CAGATATCATAATCAGCAGCAGCTGGTAGAATTCAAGAGAAGTTCGTCCAGATGATGCTC
AAGGATCTGGCCGAAATTCAGCAGCAGCAGCTGCTCGCCGCCGCCGAGGAGAACATGTCG
AACCTGACGTCGGCGTCCGGCGACCAGGCCAGCGTCTCGTCCCACCCCGCTCCTCCTCCC
GCCAAGAAGAAGCGCAGCCTCCCCGGCAACCCAGATCCTGAGGCGGAGGTGATCGCGCTG
TCGCCGAGGACGCTGATGGCGACGAACAGGTACGTGTGCGAGATCTGCGGGAAAGGGTTC
CAGCGAGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCATGGAAGCTGAAG
CAGCGGAACCCCAAGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGGCCGGCTGC
GTCCACCACGACCCGGCGCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCAGC
CGCAAGCATGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTCCAC
TCCGACTGGAAGGCCCACTCCAAGGTCTGCGGCACCCGCGAGTACCGCTGCGATTGCGGC
ACCCTCTTCTCCCGGCGGGACAGCTTCATCACGCACAGGGCGTTCTGCGACGCGCTGGCG
GAGGAGAGCGCGAGGGCGGTCACGGCGGCGGCGGCGGTGGCGGGGCAGCAGCAGCATGGC
GGCGGGATGCTCTTCTCGCAGGTGGCGGATGTGCTTGATCACCAGGCGGCGATGGCGATG
GGGGGGCATGGGCTGATGCAAGAGCTGTGCCTCAAGAGGGAGCAGCAGCAGCAGCAGCAG
CAGTTCGCGCCGTCGTGGCTCACGGCGCAGCAGCAGCAGCAGCAGCTGGAGGCGATGGCC
GGCGCGGGGAATCCGGCGGCGATGTACGGGTCGGCGAGGCTGGACCAGGAGTTCATCGGG
AGCTCCACGCCGGAGAGCGGCGGCGCGCAGCAGGCCGGCCTCAGCTTCGGGTTCTCGTCG
ACGTCATCCGCGCCGCCGCACCCCGCCGCCTCCTCGGCGCACATGTCCGCCACCGCGCTG
CTGCAGAAGGCGGCGCAGATGGGCGCGACGCTGAGCCGCCCGTCGAGCCACGCCCACATG
GCGGCGGCGGCGGCGGCGAGCACGCACAACAGCAGCAGCAGCGCCGCCACCACCAATGCT
CCCCCTCCTCCTCCTACCAGCAACGTGTCGAGCACTTGCGTCGGCGCCGGCGGCTACGGG
CTCGCCTTCGAAGCGTCCCACTTCATCGCAGCAGACGAGAGCAGCAGGGGCGCCAGGTCC
GATCGTGACACCGGCAATGGCGTCGCCGGAGCCGGCAACGACGGCCTCACCAGGGACTTC
TTGGGTCTCCGAGCCTTCTCCCACGGCAACATAATGAGCATGGCCGGCTTCGATCCCTGC
ATGTCGACGACGTCGGCGTCGTCGGCGGCGCCGTACGACCACCACCACCACAGCAACAAG
CCATGGCATAGCTAGTAACCACCTCGGCCGCCATGGATGAATAGCGAATGAATCATGCAA
GCAAATCCAAACAAATTTTGTTCGTGGGCTACTCATCGATCGTTCGACAAGAACTGCCTG
ATGATGATGATCATGTCAAGATTATTTCATAGCTGGGTAAGTGAGTCGAATTTACCCAGC
TCTCTCTCTTTTGATGTTCCAATTGAGGTTTAATAATTCGATGTTCTTTTGGGAGGGTAT
GGGCTGTTCAATTCATATATATGGAACTTTTCAAATTATATACTGTTGTTTATGCTAGCT
ATATATCATAGTTAATTCATCTTCCTACTGTAATAATAAAATTTTTAGCCATTCTCAGCT
CATAAAGCTGTGTAGAGCTACTGCCATTAGAGCTCCATTTGTAATCAGTTGTTACCATTA
ATCATTCCCTTAAATTTCTAGTTCCTG