Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0193600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:5021104:5025704:-1 gene:Os01g0193600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methyltransferase small domain containing protein. (Os01t0193600-01)
Sequence

ATGGCCACGGCCGCCGCCGCCGCCGCCGCCGCCTTCTCCCCGCTCCGCCGCCGCCTCCCG
CTTCACCACCGCGGCCGCCGCCTTCTCGCCGTCGCGGCCGCCCTCTCCCCGGAACCCCCC
GCGCCTACCCCCACCACCTCGCCGCCTCCCCCGCCCCGCAAGGGCTACTTCCCGAAGCGC
AACGAGGTGCTCGAGCTGACATGCGAGGGGCTCGCGTTCAAGGGGAAGGGCGTCTGCAGG
GTGGACGGCTCCACCTTCGTCCTGCTCTGCGACGGCGCGCTCCCCGGGGAGCGCCTCCTC
GCCCGCGTCCGCCGCATCCGCCGGGGCGCCTTCGCCGAGGCCGCCAAGCTCCGGACGCTC
GAGCCCCACCGCGACGCCGTCGACGCGCCATGCCCGCTCGCCGCCGACTGCGGCGGCTGC
AAGGCCCAGTCCCTCGCGTACGCCGCGCAGATCCGCCACAAGCACCTCCAGGTCCGCGAG
CTGCTCGTGAACTTTGGCAAGTTCGATCCCCGGAAGATGGAGAGCTCGGAGCCCGATGCT
ATCTTGAAACCCATCGTGCCGTGCGACGAGATATTTCGGTACAGGAACAAGATGGAGTTC
TCTTTTGGAACAAAGAGATGGATGCAAAGAGAGTGGAAGGAGGAGAAGGATGATGAGGTG
GTGAAGGAGGAAAAAGTTGAAGGTGATGGCTATTCGCTTGGATTGCACGCGCCAGGGTTC
TTCGACAAGGTGCTGCATGTCGAGAAATGCTTGCTGCAGAGCGAGCCGGCAGATAAGGTT
CTTGCCATTGTTCAAGAAACATGGTTGGATCCAGCTCTTGGTCTCACACCTTATGATGTG
CACAAGCATGTTGGATTTCTCAAACATCTTATGATAAGAACTGGAAGAAATATCACCACT
GGAGCTCCAGAAGTCATGGTTAATTTTGTCACATCATGTTATAAGCCAGAGCTATTGGAG
CCTCTTGTTAACAATATCACAAAAATACCAGAAGTGGTCAGTATCATGAATAATGTGAAT
ACGTCTGTTGGCAATACATCTGTGGGGGAAGAAGAATATACCTTGTATGGGAAACCAACC
ATTACAGAGATGTTGAGAGGACTTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACT
AATACAAAACAGGCTGATGTTCTGTACAAGCTTATTGGGGAATCTGCTGGGCTTAAGGGA
GATGGCTCTGAGATTATCCTTGACTTGTTCTGTGGAACCGGAACCATTGGTCTTACCCTT
GCTAGAAGGGCAAAGCATGTCTATGGATATGAAGTAGTTCCTGAAGCCATTGCAGATGCT
AAAAAGAACGCTAAGCTGAATGGTATCAGCAATGCTACATTTGTTCAGGGAGACCTTAAT
AAAATCAATGAAACATTTGGGAAGGAATTTCCGAAACCTGACATAATCATATCAGATCCT
AATCGGCCAGGGATGCATATGAAGCTAATCAAGTGGCTACTAGAAGTTAAAGCCCCTCGA
ATAGTGTACGTTTCATGTAATCCAGCTACCTGTGCACGGGATTTGGATTACTTATGTCAT
GGTGTGGAGGAAAAAGATTTGAAAGGATGCTACGAGCTGAAGACTGTAATACCTGTAGAT
ATGTTCCCCCACACTCCTCATATCGAATGTATCTGCGTGCTGGAGCTGTGTTGA

Peptide Sequence

PEP ID

Os01t0193600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:5021104:5025704:-1 gene:Os01g0193600 transcript:Os01t0193600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methyltransferase small domain containing protein. (Os01t0193600-01)
Sequence

MATAAAAAAAAFSPLRRRLPLHHRGRRLLAVAAALSPEPPAPTPTTSPPPPPRKGYFPKR
NEVLELTCEGLAFKGKGVCRVDGSTFVLLCDGALPGERLLARVRRIRRGAFAEAAKLRTL
EPHRDAVDAPCPLAADCGGCKAQSLAYAAQIRHKHLQVRELLVNFGKFDPRKMESSEPDA
ILKPIVPCDEIFRYRNKMEFSFGTKRWMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGF
FDKVLHVEKCLLQSEPADKVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTGRNITT
GAPEVMVNFVTSCYKPELLEPLVNNITKIPEVVSIMNNVNTSVGNTSVGEEEYTLYGKPT
ITEMLRGLTFQISANSFFQTNTKQADVLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTL
ARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKEFPKPDIIISDP
NRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKGCYELKTVIPVD
MFPHTPHIECICVLELC

Transcript Sequence

Transcript ID

Os01t0193600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:5021104:5025704:-1 gene:Os01g0193600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methyltransferase small domain containing protein. (Os01t0193600-01)
Sequence

ATTCTCCATCCGAACCGCGCCACCACCCGCCGCCCTCATGGCCACGGCCGCCGCCGCCGC
CGCCGCCGCCTTCTCCCCGCTCCGCCGCCGCCTCCCGCTTCACCACCGCGGCCGCCGCCT
TCTCGCCGTCGCGGCCGCCCTCTCCCCGGAACCCCCCGCGCCTACCCCCACCACCTCGCC
GCCTCCCCCGCCCCGCAAGGGCTACTTCCCGAAGCGCAACGAGGTGCTCGAGCTGACATG
CGAGGGGCTCGCGTTCAAGGGGAAGGGCGTCTGCAGGGTGGACGGCTCCACCTTCGTCCT
GCTCTGCGACGGCGCGCTCCCCGGGGAGCGCCTCCTCGCCCGCGTCCGCCGCATCCGCCG
GGGCGCCTTCGCCGAGGCCGCCAAGCTCCGGACGCTCGAGCCCCACCGCGACGCCGTCGA
CGCGCCATGCCCGCTCGCCGCCGACTGCGGCGGCTGCAAGGCCCAGTCCCTCGCGTACGC
CGCGCAGATCCGCCACAAGCACCTCCAGGTCCGCGAGCTGCTCGTGAACTTTGGCAAGTT
CGATCCCCGGAAGATGGAGAGCTCGGAGCCCGATGCTATCTTGAAACCCATCGTGCCGTG
CGACGAGATATTTCGGTACAGGAACAAGATGGAGTTCTCTTTTGGAACAAAGAGATGGAT
GCAAAGAGAGTGGAAGGAGGAGAAGGATGATGAGGTGGTGAAGGAGGAAAAAGTTGAAGG
TGATGGCTATTCGCTTGGATTGCACGCGCCAGGGTTCTTCGACAAGGTGCTGCATGTCGA
GAAATGCTTGCTGCAGAGCGAGCCGGCAGATAAGGTTCTTGCCATTGTTCAAGAAACATG
GTTGGATCCAGCTCTTGGTCTCACACCTTATGATGTGCACAAGCATGTTGGATTTCTCAA
ACATCTTATGATAAGAACTGGAAGAAATATCACCACTGGAGCTCCAGAAGTCATGGTTAA
TTTTGTCACATCATGTTATAAGCCAGAGCTATTGGAGCCTCTTGTTAACAATATCACAAA
AATACCAGAAGTGGTCAGTATCATGAATAATGTGAATACGTCTGTTGGCAATACATCTGT
GGGGGAAGAAGAATATACCTTGTATGGGAAACCAACCATTACAGAGATGTTGAGAGGACT
TACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAGGCTGATGTTCT
GTACAAGCTTATTGGGGAATCTGCTGGGCTTAAGGGAGATGGCTCTGAGATTATCCTTGA
CTTGTTCTGTGGAACCGGAACCATTGGTCTTACCCTTGCTAGAAGGGCAAAGCATGTCTA
TGGATATGAAGTAGTTCCTGAAGCCATTGCAGATGCTAAAAAGAACGCTAAGCTGAATGG
TATCAGCAATGCTACATTTGTTCAGGGAGACCTTAATAAAATCAATGAAACATTTGGGAA
GGAATTTCCGAAACCTGACATAATCATATCAGATCCTAATCGGCCAGGGATGCATATGAA
GCTAATCAAGTGGCTACTAGAAGTTAAAGCCCCTCGAATAGTGTACGTTTCATGTAATCC
AGCTACCTGTGCACGGGATTTGGATTACTTATGTCATGGTGTGGAGGAAAAAGATTTGAA
AGGATGCTACGAGCTGAAGACTGTAATACCTGTAGATATGTTCCCCCACACTCCTCATAT
CGAATGTATCTGCGTGCTGGAGCTGTGTTGATTGTCAGTTCTGTTCATCCAAAAGAAACC
ACAAGGATTTCAAATGCTTCATCTTGCCCTCATTTCCTGACAACTAGACTTGCAGGTCGG
AAATTGGATCGCAGTCTGCAAAGCCATGTTGTTGGTGTTTTTACAAGATATAGAGTATTC
ATTTACTGAAACTCCCACATTGGGTTTTATAGTTGTGGAGGACGCAGCTTAGCTGAATGA
GTTCTTCAATTGACATATCTCATGCGGAAGAGAAGAGAGGTTCTCTTAAAGAACAAGCAG
ATGGGAAGAGGCAACCAAACTACCAAAGTTGATGTAGTTCCTCATCCTCAATTGTGATTG
GAGCTACCCATGCGTCAATGAAATGTTGTCAGATCTTTTCTTGTGTGAAAATTTGTAGCT
AATGCTAAATTCTCAAACTATCACTGATGGCTATACCGAAGAGTTTTTGAAACTTTTGTA
GGGAGCAAAATTAGAAGCAAAATGCAGGATAGTTTGAGAAAGTATGCATTTTTTTTTTGT
CGAATCCCCTAAATTTCCAGATTGATAAATTAGTGAAGCTTTAAGGTACAAACTCATTAT
ACAGAAGATACACGAATCACTGTGTC