Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0189800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:4796155:4798454:-1 gene:Os01g0189800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os01t0189800-01)
Sequence

ATGCGGATCCCCACGACGGAGACGGAGACGGGGACGGGGACACGCAGCCACAGGCGGCGC
AAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGACCGACGCATCCCGTCGCGGACCA
ACGCCGACCAAGGAAACGGAGATTCCCGGGCGGCCGCCGAAGCGATCCTCCTTAACCCTA
TCGTTGGACGACGCGGGCGCCTCCAATCCAGCCTCAACCTGGGCGATCCTGAATCGGTAC
GGCGCCCGGAGGGATTCCTTCCGCGGCGACGACCGCGACCGCACCACGTCGGCGGTCTCC
TACACCTCCGGCGGCGACCAGATCTCCGTCTCCTTCGAGCTCGTGAAGCCGCCGGAGACC
TCCCTCCTCACCCTCGACTGGCCGCAGGGGCCCCGCCCGTCGGCGGGAACCACATCCTAC
CCATACGTCATCGCCGCGCACGACAACGTCGTCCTGTTCCAGATCATCTCCCCCGACAAG
TACGCTCGCCCTTCCGCCATCGACTACTTCGTCTACAATGCCAACAGCAGCAGCAGCAGC
AACCACCACCCCTCCTTGACGCGGCTGCCCGTCTCCTACTGGAGGAGGAGAGACACCCTT
CGCCCGCGCATCATGAGCAGGGAAGGCACATGTATTCTGTCCTGCAGCAACAATTCTCCT
TCGTTCGTTGTGGCTGAGCTCGAGAGAAGATCATGCCAATCTTCCGAAACCAACATCTAC
CTCTTTGCTTCTGGCTCCGATGACTGGAGAGTCTTCAGGAATGTGCCGATCCGCCATGGC
GACGGCCTCGCTCACCTGTGCTGGTGGACAACTGATGCAGTGTTGTCGTACCACAATCGC
TACATGATCTGGGTGGACTACTTGGTAGCAGGGATGATCGTCGCCAAAGTGGCACATCCA
GGAAGGGTTGACCCACCGGAGCCTGTTCTATGGTACGTGCCGCTTCCTGTCGATCCAGTT
GATGGGAACCCTTATGACATTGACCGTGGGCGAGGATGCCCTCAAGCCTCCCGTAGTGTG
TGTGCCACCCACCATGGCATCAAGTTCGTCAATGTTAACCAACATGGCGGCGGCAGCAGC
AGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCTGTGGTCGTGGCGCGAGGAGGAT
CAAACATGGGGAGAAGATGCAACATTGGATGCTGACCAACTTCGGGACCTCGATTCTGAG
AACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCC
GTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGTGGATG
ATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGA
AGCCCTTCTACTGCCAGAAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCA
TCTTACCTGTCTAGAAAAACCATCAAAAGGCAGGAGGTTGATAAGCTAGGAATATGA

Peptide Sequence

PEP ID

Os01t0189800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:4796155:4798454:-1 gene:Os01g0189800 transcript:Os01t0189800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os01t0189800-01)
Sequence

MRIPTTETETGTGTRSHRRRKGSSDGSRAVHRTDASRRGPTPTKETEIPGRPPKRSSLTL
SLDDAGASNPASTWAILNRYGARRDSFRGDDRDRTTSAVSYTSGGDQISVSFELVKPPET
SLLTLDWPQGPRPSAGTTSYPYVIAAHDNVVLFQIISPDKYARPSAIDYFVYNANSSSSS
NHHPSLTRLPVSYWRRRDTLRPRIMSREGTCILSCSNNSPSFVVAELERRSCQSSETNIY
LFASGSDDWRVFRNVPIRHGDGLAHLCWWTTDAVLSYHNRYMIWVDYLVAGMIVAKVAHP
GRVDPPEPVLWYVPLPVDPVDGNPYDIDRGRGCPQASRSVCATHHGIKFVNVNQHGGGSS
SSSSSSRSFSITLWSWREEDQTWGEDATLDADQLRDLDSENRLPNIQPEFPVVDMENPYA
VCFLLNERYHTADPNATTWMIKVHMKKKVLLDCTGYSNKGSPSTARRMSEGLSFISSEMP
SYLSRKTIKRQEVDKLGI

Transcript Sequence

Transcript ID

Os01t0189800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:4796155:4798454:-1 gene:Os01g0189800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os01t0189800-01)
Sequence

GTTTATCTTCGTCTCGCCTTTGTTTTCCCCTTCGCGCACCAAACACCAAACACCAAACCC
TCGCCGCCGCCGCCGCCGCCGCCGCCGCCATGCGGATCCCCACGACGGAGACGGAGACGG
GGACGGGGACACGCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTAC
ACCGGACCGACGCATCCCGTCGCGGACCAACGCCGACCAAGGAAACGGAGATTCCCGGGC
GGCCGCCGAAGCGATCCTCCTTAACCCTATCGTTGGACGACGCGGGCGCCTCCAATCCAG
CCTCAACCTGGGCGATCCTGAATCGGTACGGCGCCCGGAGGGATTCCTTCCGCGGCGACG
ACCGCGACCGCACCACGTCGGCGGTCTCCTACACCTCCGGCGGCGACCAGATCTCCGTCT
CCTTCGAGCTCGTGAAGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAGGGGC
CCCGCCCGTCGGCGGGAACCACATCCTACCCATACGTCATCGCCGCGCACGACAACGTCG
TCCTGTTCCAGATCATCTCCCCCGACAAGTACGCTCGCCCTTCCGCCATCGACTACTTCG
TCTACAATGCCAACAGCAGCAGCAGCAGCAACCACCACCCCTCCTTGACGCGGCTGCCCG
TCTCCTACTGGAGGAGGAGAGACACCCTTCGCCCGCGCATCATGAGCAGGGAAGGCACAT
GTATTCTGTCCTGCAGCAACAATTCTCCTTCGTTCGTTGTGGCTGAGCTCGAGAGAAGAT
CATGCCAATCTTCCGAAACCAACATCTACCTCTTTGCTTCTGGCTCCGATGACTGGAGAG
TCTTCAGGAATGTGCCGATCCGCCATGGCGACGGCCTCGCTCACCTGTGCTGGTGGACAA
CTGATGCAGTGTTGTCGTACCACAATCGCTACATGATCTGGGTGGACTACTTGGTAGCAG
GGATGATCGTCGCCAAAGTGGCACATCCAGGAAGGGTTGACCCACCGGAGCCTGTTCTAT
GGTACGTGCCGCTTCCTGTCGATCCAGTTGATGGGAACCCTTATGACATTGACCGTGGGC
GAGGATGCCCTCAAGCCTCCCGTAGTGTGTGTGCCACCCACCATGGCATCAAGTTCGTCA
ATGTTAACCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCA
TCACCCTGTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATG
CTGACCAACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCC
CCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACA
CTGCTGACCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTAC
TAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTACTGCCAGAAGGATGTCTGAGG
GGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAAAACCATCAAAAGGC
AGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAAG
ATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATG
TTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTA
GTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGATTATGGATGGATTGT
ATGCTATATTATTTTGTCTCGCATGTCCATATTATTTTTATATTTTTGTTGCTGTGGCAC
TGCTC