Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0187900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:4714730:4718746:-1 gene:Os01g0187900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription factor MYBS2. (Os01t0187900-01)
Sequence

ATGACGAGGCGGTGCTCGCACTGCAGCAACAACGGCCACAACGCGCGGACCTGCCCCGCC
CGCGGCGGCGGTGGAGGCGGAGGCGGGGTGAGGCTGTTCGGCGTGCGGCTCACGTCGCCG
CCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGT
GGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGA
GAGGGCGCGGCCGGGTACGCGTCCGACGACCCCACGCACGCCTCCTGCTCGACGAATGGC
CGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAAGAAGAGCATAGAATGTTTCTAATG
GGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCC
AGGACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATTAGACAGACAAACTCA
TCAAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATGGTCCCAGAAATGCCCATGGACGAA
TCCCCAGTGGTCGTAGAACAGCTTATGCTCCATAGTACTCAAGACGAAGCCACAAGCTCA
AATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTG
TCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCA
CTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCA
ACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCTCCAAATGTTGCTAAT
GTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAG
GTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCAAGCTTACCATAGGTGACGGCAGC
TCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGA
CAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAAC
AGCCCAATTCATGCAGTTTGA

Peptide Sequence

PEP ID

Os01t0187900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:4714730:4718746:-1 gene:Os01g0187900 transcript:Os01t0187900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription factor MYBS2. (Os01t0187900-01)
Sequence

MTRRCSHCSNNGHNARTCPARGGGGGGGGVRLFGVRLTSPPEVAMKKSASMSCIASSLGS
GGGSGGSSPAGTGRGGGGGGEGAAGYASDDPTHASCSTNGRGERKKGTPWTEEEHRMFLM
GLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQTNSSRRKRRSSLFDMVPEMPMDE
SPVVVEQLMLHSTQDEATSSNQLPISHLVKQKEPEFARHLSDLQLRKHEESEFTEPSLAA
LDLEMNHAAPFKTKFVLTMPTFYPALIPVPLTLWPPNVANVGESGTNHEILKPTPVNGKE
VINKADEVVGMSKLTIGDGSSNSIEPSALSLQLTGPTNTRQSAFHVNPPMAGPDLNKRNN
SPIHAV

Transcript Sequence

Transcript ID

Os01t0187900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:4714730:4718746:-1 gene:Os01g0187900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription factor MYBS2. (Os01t0187900-01)
Sequence

GAAAAGAACAAGAAGACAGATAGAGAAGGAGAAAACCCACCGCGCGCGGCGGCGGCGGCG
GCGAGGGTCGACGAGGCGACGCATTTTGGTGATCTCGTGGTGTCACGGTGCGTGTGCGAT
GACGAGGCGGTGCTCGCACTGCAGCAACAACGGCCACAACGCGCGGACCTGCCCCGCCCG
CGGCGGCGGTGGAGGCGGAGGCGGGGTGAGGCTGTTCGGCGTGCGGCTCACGTCGCCGCC
GGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGTGG
CGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGAGA
GGGCGCGGCCGGGTACGCGTCCGACGACCCCACGCACGCCTCCTGCTCGACGAATGGCCG
CGGCGAGCGGAAGAAAGGTACACCTTGGACTGAAGAAGAGCATAGAATGTTTCTAATGGG
TCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCCAG
GACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATTAGACAGACAAACTCATC
AAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATGGTCCCAGAAATGCCCATGGACGAATC
CCCAGTGGTCGTAGAACAGCTTATGCTCCATAGTACTCAAGACGAAGCCACAAGCTCAAA
TCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTGTC
GGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACT
AGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAAC
ATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCTCCAAATGTTGCTAATGT
GGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGT
GATCAATAAGGCTGATGAGGTTGTTGGCATGTCCAAGCTTACCATAGGTGACGGCAGCTC
TAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACA
ATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAG
CCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATT
ATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTA
GCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGT
ATGCATATACCTTTGATAATACATCCTCCATCCTTTGGAGAAAATGGTTTTC