Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0187400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:4673407:4684765:1 gene:Os01g0187400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to glycine-rich protein. (Os01t0187400-01)
Sequence	ATGGCACCCCACCTCCACCTCCGGTTGCTGCTGGTCGTCGGCGTGGCCCTCGGGAGCGCG GGGCTGGGCTGGGGGGGAGGAGGAGGGGAGGGGGAGGCGACAGATCGGGAGGCGCCGGAC CCGTACTCGATCCTGACGTGGCACGACTACTCGCCGCCGTCGCCGCCGCCGCCGCCGCCG CCGCCGGTGGCGCCCGCGGCCACCTGCGAGGGGGACCTGCACGGGAAGGGGAACTTCAGC ACCCGCTGCGAGGTCTCCGAGGAGGTGGAGCTCGGCGGGGACGTCTACATCACCGGGGAG GGCAGCCTCGTGCTCCTCGCCGGCGCCGCCCTCACCTGCCAGAGGCCCGGCTGCGTCATC TCCGCCAACCTCTCCGGCGAGGTCCGCCTCGGCCGCGGCGTCCGCGTCATCGCCGGGAGG GTCTCCCTCGCCGCGGCCAACGTCACAATCGCCGACACGGTCGTTGTCAACACCACCGCG CTCGCCGGCGATCCGCCCGAGCGGACCAGCGGGGTGCCCACGGGGACGCACGGCGACGGC GGCGGCCACGGTGGCCGTGGCGCCAGCTGCTACGTCAAGGATGGGCAGACGCAGGAGGAC TCGTGGGGCGGTGACGCCTACGCGTGGTCCGACCTCGAGCACCCGTTTAGCTATGGAAGC AAAGGGGGCTCTACCAGCGTTGAGAAGGACTACGGCGGAAGCGGCGGCGGTATCGTGTGG CTGTATGCCGATGACCTGATAATGAATGGCACAGTGCTCGCCGATGGAGGGGATAGCAGC GAGAAGGGCGGTGGTGGTTCTGGGGGAAGCATCTATATCAAGTCTAAGACTATGCATGGT GCTGGCAAGATAAGTGCTTCAGGAGGGAATGGTCTGGCTGGGGGTGGTGGAGGACGCGTT TCTATTAATGTTTTCAGTAGACATGATGACACCCAAGTTTTTGCTCATGGGGGGAAGAGT TCGGGCTGTCCAGATAATGCAGGAGCTGCCGGAACTCTTTATGAGGCTGTACCTAAGAGT CTTGTTGTTAGCAACAACAACTTGAGTACACAAACTGACACTCTTCTTTTAGAGTTCCCA AATCAACCACTATGGACCAATGTTTTTGTCAAGAATCATGCTAAAGTTGCTGTTCCCTTG CTATGGAGTCGTGTTCAGGTCCAAGGGCAACTTAGTCTTCTATCCGGTGCTATTCTAACT TTTGGTTTGACCCGTTATCCATACTCGGAGTTTGAATTGATGGCTGAGGAGCTTCTTATG AGTGACTCAACAATCAAGGTGTTTGGTGCCTTGAGAATGTCTGTAAAGATGCTTCTTATG TGGAACTCCAAAATGTTAATTGATGGTGGTGGAGATTCAATAGTTGCAACATCGTTACTT GATGCTAGCAATTTGATAGTTCTAAAGGAATCATCTGTAATACACTCTAATGCTAATCTT GGAGTTCGTGGTCAAGGTCTGTTGAATTTATCTGGAGAAGGAGACATAATTGAAGCACAA CGACTTATTTTATCTCTATTCTACAGTATAAAAGTTGGACCTGGCTCCATTTTACGGGGT CCACTTGTAAATGGAAGTAGCGGTGACGTGGCACCAAAGCTGAACTGTGATGATGACATC TGTCCTGTGGAAATAATACACCCACCAGAAGATTGCAATCTGAACTCATCACTGTCATTT ACTCTTCAGGTATGTCGTGTTGAAGATATTGACATCTGGGGTCTCGTACAAGGAACTGTA ATTCATTTCAATAGAGCTAGAAGTGTCAGTGTGCACACATCTGGTACCATCAGTGCAACA GGCTTGGGCTGCCGAAGTGGAGTAGGACAAGGAAAGATATTAAACAGTGGTGTAAGTGGT GGTGGTGGTCATGGTGGTAGAGGGGGGGATGGCTTTTATAATGAAAGCCATGCTGAGGGT GGATCTATGTACGGTAGTGCTGATTTACCATGTGAACTTGGCAGTGGCAGTGGTAATGAC ACCACAAAGCTTTCCACCGCTGGTGGTGGTATAATAGTGATGGGCTCATGGGAGTATTCT CTACCAAGTCTTTCCCTCTATGGTTCAGTAGAATCAAATGGTCAAAGTTCCACTGATGTG GTAACAAATGCTTCTATTGGAGGACCCGGTGGTGGTTCTGGGGGCACAATTCTTCTTTTT GTACGTGCTTTGTCCCTAGCGGAGAGCTCCATCCTTTCAAGTGTTGGTGGTCTTGGAAAC TTTGGCAGTGGTGGAGGTGGAGGGGGAAGGATTCACTTCCACTGGTCAAACATTCCAACT GGAGATGAGTATGTTCCTGTTGCAGCTGTTAAAGGATCAATACGTACAAGTGGAGGAATC AGCAAAGGGAAAGGATTTCCTGGCGAGAACGGAACAGTTACAGGAAAAGCTTGCCCAAAG GGTCTCTATGGTACATTTTGCAAGGAATGCCCCTTGGGAACGTATAAGAACGTTACTGGA TCTTCTAAATCTCTGTGCGTTCAATGCCCTCCAGATGAACTCCCTCATCGTGCGATTTAC ACAAGTGTCCGAGGAGGTGCTTATGAAACCCCATGCCCATACAAATGTGTATCAGATAGA TATCGTATGCCTCACTGTTATACTGCTCTGGAAGAGTTGATATACACTTTTGGGGGACCT TGGTTATTTGGCCTATTACTTTCAGGTCTTCTTGTTTTGTTAGCTCTTGTTTTAAGTGTT GCCAGGATGAAATTTGTTGGTACTGATGAGTTACCTGGGCCCGCACCAACTCAACAAGGA TCCCAAATTGATCATTCTTTTCCTTTCCTAGAATCTCTAAATGAGGTCTTGGAAACTAAT AGGGCTGAGGAATCGCATGGGCATGTACACAGGATGTATTTCATGGGCCCCAACACCTTC AGTGAACCTTGGCATCTCCCACACACCCCACCAGAACAGATTTCTGAGATTGTGTATGAG GATGCATTTAACCGATTTGTCGATGAGATAAACACTCTTGCAGCTTACCAGTGGTGGGAA GGATCGATTCACAGTATCCTCTGTGTACTTGCATACCCCTTGGCCTGGTCATGGCAACAG TTCCGTAGGAGAAAGAAATTGCAAAGACTTCGTGAATTTGTTCGCTCTGAGTATGACCAT TCGTGCTTACGTTCTTGCCGTTCACGTGCGCTTTATGAAGGGCTCAAGGTGACTGCAACT CCTGATCTTATGCTGGGCTATTTAGATTTCTTCCTTGGGGGAGATGAAAAAAGGCCTGAT CTTCCACCTCGTCTTCGCCAAAGGTTTCCAATGTGCTTGATCTTTGGAGGTGATGGAAGT TACATGGCTCCATTTTCACTCCATAGTGATAGTGTACTCACTAGCCTTATGAGTCAGGCT GTTCCCTCATCGATATGGCACCGTCTTGTAGCTGGATTGAATGCCCAGTTGCGTTTGGTT CGACGTGGAAGTCTCAGAGGAACATTTCTTCCTGTCCTCGACTGGCTTGAAACCCATGCT AATCCCTCTCTGGGTGTGAATGGTGTTCGTGTTGATCTTGCCTGGTTCCAAGCTACAGCA TTAGGGTATTGCCAACTTGGTCTTGTCGTTTATGCTGTTGAAGAACCAATGAGTGCAGAG CTTGATGGTAGCCCTAGAATTAAAATAGAGCAACATTCACTAACACAGAACATGCATGCT GATACTCAACTAGGCCATTCTAGAATTAAGGAAGCTCTTATGCGCAAAAGGATCACAGGC GGAATTCTTGATAGTAATAGCTTAAGGACGCTTAAAGACAGGAGAGATTTGTTTTACCCG TTTTCTCTCATCTTGCACAACACTAAACCAGTTGGCCATCAGGATCTTGTTGGCTTAGTA ATCTCAATATTGCTTCTCGCAGATTTTAGCTTAGTGTTACTGACTTTTCTCCAGCTATAT TCATACTCTATGGCCGATGTTCTCTTAGTTTTATTTGTTCTTCCACTTGGGATACTATCA CCTTTTCCTGCTGGAATAAATGCTCTTTTTAGTCATGGACCACGGCGATCAGCAGGCCTT GCTCGTGTGTATGCATTATGGAACATTACTTCACTGGTCAATGTTGTTGTGGCTTTTGCT TGCGGCCTTGTACACTACAAGTCATCAACCAAAAGACATCCTAGTACGCAGCCATGGAAC CTTGGAACGGATGAAAGTGGCTGGTGGCTCTTCCCTACTGGACTCATGTTGCTGAAATGC ATCCAAGCTAGGCTTGTCGATTGGCATGTGGCTAATTTAGAGATTCAAGACCGCGCAGTA TATAGCAATGACCCAAGCATATTTTGGCAGTCATGA

Peptide Sequence

PEP ID	Os01t0187400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:4673407:4684765:1 gene:Os01g0187400 transcript:Os01t0187400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to glycine-rich protein. (Os01t0187400-01)
Sequence	MAPHLHLRLLLVVGVALGSAGLGWGGGGGEGEATDREAPDPYSILTWHDYSPPSPPPPPP PPVAPAATCEGDLHGKGNFSTRCEVSEEVELGGDVYITGEGSLVLLAGAALTCQRPGCVI SANLSGEVRLGRGVRVIAGRVSLAAANVTIADTVVVNTTALAGDPPERTSGVPTGTHGDG GGHGGRGASCYVKDGQTQEDSWGGDAYAWSDLEHPFSYGSKGGSTSVEKDYGGSGGGIVW LYADDLIMNGTVLADGGDSSEKGGGGSGGSIYIKSKTMHGAGKISASGGNGLAGGGGGRV SINVFSRHDDTQVFAHGGKSSGCPDNAGAAGTLYEAVPKSLVVSNNNLSTQTDTLLLEFP NQPLWTNVFVKNHAKVAVPLLWSRVQVQGQLSLLSGAILTFGLTRYPYSEFELMAEELLM SDSTIKVFGALRMSVKMLLMWNSKMLIDGGGDSIVATSLLDASNLIVLKESSVIHSNANL GVRGQGLLNLSGEGDIIEAQRLILSLFYSIKVGPGSILRGPLVNGSSGDVAPKLNCDDDI CPVEIIHPPEDCNLNSSLSFTLQVCRVEDIDIWGLVQGTVIHFNRARSVSVHTSGTISAT GLGCRSGVGQGKILNSGVSGGGGHGGRGGDGFYNESHAEGGSMYGSADLPCELGSGSGND TTKLSTAGGGIIVMGSWEYSLPSLSLYGSVESNGQSSTDVVTNASIGGPGGGSGGTILLF VRALSLAESSILSSVGGLGNFGSGGGGGGRIHFHWSNIPTGDEYVPVAAVKGSIRTSGGI SKGKGFPGENGTVTGKACPKGLYGTFCKECPLGTYKNVTGSSKSLCVQCPPDELPHRAIY TSVRGGAYETPCPYKCVSDRYRMPHCYTALEELIYTFGGPWLFGLLLSGLLVLLALVLSV ARMKFVGTDELPGPAPTQQGSQIDHSFPFLESLNEVLETNRAEESHGHVHRMYFMGPNTF SEPWHLPHTPPEQISEIVYEDAFNRFVDEINTLAAYQWWEGSIHSILCVLAYPLAWSWQQ FRRRKKLQRLREFVRSEYDHSCLRSCRSRALYEGLKVTATPDLMLGYLDFFLGGDEKRPD LPPRLRQRFPMCLIFGGDGSYMAPFSLHSDSVLTSLMSQAVPSSIWHRLVAGLNAQLRLV RRGSLRGTFLPVLDWLETHANPSLGVNGVRVDLAWFQATALGYCQLGLVVYAVEEPMSAE LDGSPRIKIEQHSLTQNMHADTQLGHSRIKEALMRKRITGGILDSNSLRTLKDRRDLFYP FSLILHNTKPVGHQDLVGLVISILLLADFSLVLLTFLQLYSYSMADVLLVLFVLPLGILS PFPAGINALFSHGPRRSAGLARVYALWNITSLVNVVVAFACGLVHYKSSTKRHPSTQPWN LGTDESGWWLFPTGLMLLKCIQARLVDWHVANLEIQDRAVYSNDPSIFWQS

Transcript Sequence

Transcript ID	Os01t0187400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:4673407:4684765:1 gene:Os01g0187400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to glycine-rich protein. (Os01t0187400-01)
Sequence	GAGGAGAGAGAAACTAAACCCAACCCAAATAGGGGGAGGAGGAGGAGGAGGCGCAACCAA ACCCAACCCCGCCGCCTCCGCCGCCGCCGCCGAGGAGGATCTCCGTCGAAGGCCCACCGG AGCTCAGCTTGCGGGGAACTCTTCTAGCGGCTGGAGTCTGATGCGTCCCAGCCCATGGCA CCCCACCTCCACCTCCGGTTGCTGCTGGTCGTCGGCGTGGCCCTCGGGAGCGCGGGGCTG GGCTGGGGGGGAGGAGGAGGGGAGGGGGAGGCGACAGATCGGGAGGCGCCGGACCCGTAC TCGATCCTGACGTGGCACGACTACTCGCCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCG GTGGCGCCCGCGGCCACCTGCGAGGGGGACCTGCACGGGAAGGGGAACTTCAGCACCCGC TGCGAGGTCTCCGAGGAGGTGGAGCTCGGCGGGGACGTCTACATCACCGGGGAGGGCAGC CTCGTGCTCCTCGCCGGCGCCGCCCTCACCTGCCAGAGGCCCGGCTGCGTCATCTCCGCC AACCTCTCCGGCGAGGTCCGCCTCGGCCGCGGCGTCCGCGTCATCGCCGGGAGGGTCTCC CTCGCCGCGGCCAACGTCACAATCGCCGACACGGTCGTTGTCAACACCACCGCGCTCGCC GGCGATCCGCCCGAGCGGACCAGCGGGGTGCCCACGGGGACGCACGGCGACGGCGGCGGC CACGGTGGCCGTGGCGCCAGCTGCTACGTCAAGGATGGGCAGACGCAGGAGGACTCGTGG GGCGGTGACGCCTACGCGTGGTCCGACCTCGAGCACCCGTTTAGCTATGGAAGCAAAGGG GGCTCTACCAGCGTTGAGAAGGACTACGGCGGAAGCGGCGGCGGTATCGTGTGGCTGTAT GCCGATGACCTGATAATGAATGGCACAGTGCTCGCCGATGGAGGGGATAGCAGCGAGAAG GGCGGTGGTGGTTCTGGGGGAAGCATCTATATCAAGTCTAAGACTATGCATGGTGCTGGC AAGATAAGTGCTTCAGGAGGGAATGGTCTGGCTGGGGGTGGTGGAGGACGCGTTTCTATT AATGTTTTCAGTAGACATGATGACACCCAAGTTTTTGCTCATGGGGGGAAGAGTTCGGGC TGTCCAGATAATGCAGGAGCTGCCGGAACTCTTTATGAGGCTGTACCTAAGAGTCTTGTT GTTAGCAACAACAACTTGAGTACACAAACTGACACTCTTCTTTTAGAGTTCCCAAATCAA CCACTATGGACCAATGTTTTTGTCAAGAATCATGCTAAAGTTGCTGTTCCCTTGCTATGG AGTCGTGTTCAGGTCCAAGGGCAACTTAGTCTTCTATCCGGTGCTATTCTAACTTTTGGT TTGACCCGTTATCCATACTCGGAGTTTGAATTGATGGCTGAGGAGCTTCTTATGAGTGAC TCAACAATCAAGGTGTTTGGTGCCTTGAGAATGTCTGTAAAGATGCTTCTTATGTGGAAC TCCAAAATGTTAATTGATGGTGGTGGAGATTCAATAGTTGCAACATCGTTACTTGATGCT AGCAATTTGATAGTTCTAAAGGAATCATCTGTAATACACTCTAATGCTAATCTTGGAGTT CGTGGTCAAGGTCTGTTGAATTTATCTGGAGAAGGAGACATAATTGAAGCACAACGACTT ATTTTATCTCTATTCTACAGTATAAAAGTTGGACCTGGCTCCATTTTACGGGGTCCACTT GTAAATGGAAGTAGCGGTGACGTGGCACCAAAGCTGAACTGTGATGATGACATCTGTCCT GTGGAAATAATACACCCACCAGAAGATTGCAATCTGAACTCATCACTGTCATTTACTCTT CAGGTATGTCGTGTTGAAGATATTGACATCTGGGGTCTCGTACAAGGAACTGTAATTCAT TTCAATAGAGCTAGAAGTGTCAGTGTGCACACATCTGGTACCATCAGTGCAACAGGCTTG GGCTGCCGAAGTGGAGTAGGACAAGGAAAGATATTAAACAGTGGTGTAAGTGGTGGTGGT GGTCATGGTGGTAGAGGGGGGGATGGCTTTTATAATGAAAGCCATGCTGAGGGTGGATCT ATGTACGGTAGTGCTGATTTACCATGTGAACTTGGCAGTGGCAGTGGTAATGACACCACA AAGCTTTCCACCGCTGGTGGTGGTATAATAGTGATGGGCTCATGGGAGTATTCTCTACCA AGTCTTTCCCTCTATGGTTCAGTAGAATCAAATGGTCAAAGTTCCACTGATGTGGTAACA AATGCTTCTATTGGAGGACCCGGTGGTGGTTCTGGGGGCACAATTCTTCTTTTTGTACGT GCTTTGTCCCTAGCGGAGAGCTCCATCCTTTCAAGTGTTGGTGGTCTTGGAAACTTTGGC AGTGGTGGAGGTGGAGGGGGAAGGATTCACTTCCACTGGTCAAACATTCCAACTGGAGAT GAGTATGTTCCTGTTGCAGCTGTTAAAGGATCAATACGTACAAGTGGAGGAATCAGCAAA GGGAAAGGATTTCCTGGCGAGAACGGAACAGTTACAGGAAAAGCTTGCCCAAAGGGTCTC TATGGTACATTTTGCAAGGAATGCCCCTTGGGAACGTATAAGAACGTTACTGGATCTTCT AAATCTCTGTGCGTTCAATGCCCTCCAGATGAACTCCCTCATCGTGCGATTTACACAAGT GTCCGAGGAGGTGCTTATGAAACCCCATGCCCATACAAATGTGTATCAGATAGATATCGT ATGCCTCACTGTTATACTGCTCTGGAAGAGTTGATATACACTTTTGGGGGACCTTGGTTA TTTGGCCTATTACTTTCAGGTCTTCTTGTTTTGTTAGCTCTTGTTTTAAGTGTTGCCAGG ATGAAATTTGTTGGTACTGATGAGTTACCTGGGCCCGCACCAACTCAACAAGGATCCCAA ATTGATCATTCTTTTCCTTTCCTAGAATCTCTAAATGAGGTCTTGGAAACTAATAGGGCT GAGGAATCGCATGGGCATGTACACAGGATGTATTTCATGGGCCCCAACACCTTCAGTGAA CCTTGGCATCTCCCACACACCCCACCAGAACAGATTTCTGAGATTGTGTATGAGGATGCA TTTAACCGATTTGTCGATGAGATAAACACTCTTGCAGCTTACCAGTGGTGGGAAGGATCG ATTCACAGTATCCTCTGTGTACTTGCATACCCCTTGGCCTGGTCATGGCAACAGTTCCGT AGGAGAAAGAAATTGCAAAGACTTCGTGAATTTGTTCGCTCTGAGTATGACCATTCGTGC TTACGTTCTTGCCGTTCACGTGCGCTTTATGAAGGGCTCAAGGTGACTGCAACTCCTGAT CTTATGCTGGGCTATTTAGATTTCTTCCTTGGGGGAGATGAAAAAAGGCCTGATCTTCCA CCTCGTCTTCGCCAAAGGTTTCCAATGTGCTTGATCTTTGGAGGTGATGGAAGTTACATG GCTCCATTTTCACTCCATAGTGATAGTGTACTCACTAGCCTTATGAGTCAGGCTGTTCCC TCATCGATATGGCACCGTCTTGTAGCTGGATTGAATGCCCAGTTGCGTTTGGTTCGACGT GGAAGTCTCAGAGGAACATTTCTTCCTGTCCTCGACTGGCTTGAAACCCATGCTAATCCC TCTCTGGGTGTGAATGGTGTTCGTGTTGATCTTGCCTGGTTCCAAGCTACAGCATTAGGG TATTGCCAACTTGGTCTTGTCGTTTATGCTGTTGAAGAACCAATGAGTGCAGAGCTTGAT GGTAGCCCTAGAATTAAAATAGAGCAACATTCACTAACACAGAACATGCATGCTGATACT CAACTAGGCCATTCTAGAATTAAGGAAGCTCTTATGCGCAAAAGGATCACAGGCGGAATT CTTGATAGTAATAGCTTAAGGACGCTTAAAGACAGGAGAGATTTGTTTTACCCGTTTTCT CTCATCTTGCACAACACTAAACCAGTTGGCCATCAGGATCTTGTTGGCTTAGTAATCTCA ATATTGCTTCTCGCAGATTTTAGCTTAGTGTTACTGACTTTTCTCCAGCTATATTCATAC TCTATGGCCGATGTTCTCTTAGTTTTATTTGTTCTTCCACTTGGGATACTATCACCTTTT CCTGCTGGAATAAATGCTCTTTTTAGTCATGGACCACGGCGATCAGCAGGCCTTGCTCGT GTGTATGCATTATGGAACATTACTTCACTGGTCAATGTTGTTGTGGCTTTTGCTTGCGGC CTTGTACACTACAAGTCATCAACCAAAAGACATCCTAGTACGCAGCCATGGAACCTTGGA ACGGATGAAAGTGGCTGGTGGCTCTTCCCTACTGGACTCATGTTGCTGAAATGCATCCAA GCTAGGCTTGTCGATTGGCATGTGGCTAATTTAGAGATTCAAGACCGCGCAGTATATAGC AATGACCCAAGCATATTTTGGCAGTCATGACACTTGGCATTACTACTACTAAAGGTTCTT TTGGGAGCTTTTTACAACTCAATTTTTTGGGAGTTGATAAAAGGAAGGGTGGGGGTACTC AAAGCACGGCCTTTCTTTATTGACCTTTGGCCGAAGAAGAAGCAACTACTACAGTGGGTT ATAGATGCAATTTCCGCGTCCCTCTGCTAATCATATGTGCAGTCACAACCAACCTGTATT TTGGTGTTGTATATATAAAAAAGGTGTACTTGATCCATTATTTGTAGGATTTAGACACCA TAGAGTTTATAAACAGTTCCCAAGCTAACTGAAGAGATGTGATTTTGTTGTTGTTGCTAC TGCTCTTGTTGTCGGTGCTATGTACTTTGCCTCTAGATGTTGAGCTGGGCAAGGCAGGCA TTGACTGTGAAACTTGTACTACCTGATTGGATAACACAAGTGCTAACTTGGCTGATGGTT TTCATCCCTCATCATTAACCCAATGCAATGCTGATACCACCGAGTTGTG