Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0184500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:4485764:4490158:-1 gene:Os01g0184500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 39 description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0184500-01)
Sequence	ATGGCGATGGCCGGCGCCGCCGGGCGGTGCCTCATGCTGACCCGCCCGTCCCCTCTCCTC CGCCTCCGCCTCCTCCGCGCCGCGCTCGCTACCACCACGACCACCACCACGGCGGCGGGG GCATCCGCCGTCACCGCGCCGACCGAGCCCGAGACCACGGCGAGGGAGGCCCCGTCCCGC CACGAGCTCCTCCTCGAGCGCCTCCGGCAGCGCCACCTCAAGGGCGTGCCCGCTGCTACC CCGAGGCCGGCGCAGCGGGAGAAGGGGAGGGGCGGCGGCGGCGGTGGCGCGCAGGAGCTG CAGCAGAAGAGGAGGGTCGAGGTGGTGGATAGTTTCGAGGAGCTCGGGCTCGGGGAGGAG GTGATGGCCGCGCTCGGGGAGATGGGTATCTCCAAGCCCACCGAGATCCAGTGCGTTGGT GTGCCCGCCGTGCTGGCTGGCACCAGTGTTGTGCTTGGCTCGCACACCGGTTCCGGGAAG ACGCTCGCCTACCTGCTCCCGCTTGTTCAGCTACTGCGTCGTGATGAAGCAATGTTGGGA ATGTCAATGAAACCAAGGAGGCCAAGAGCAGTAGTTCTCTGCCCCACAAGGGAGCTGACT GAGCAGGTCTTCCGTGTCGCAAAGTCCATAAGCCATCACGCACGTTTTCGGTCAACAATG GTTAGTGGAGGCAGCCGTATAAGGCCCCAGGAAGATTCTCTGAACATGCCTGTAGACATG GTTGTTGGGACTCCTGGGAGGATTCTTGATCATATCAAGGATGGAAACATGGTTTATGGT GATATCAAGTATCTGGTCCTTGATGAGGCAGATACGATGTTTGATCAAGGTTTTGGACCA GACATTAGGAAGTTTCTTGCTCCTTTGAAGAATCGTGCTGCAAAACCTGGCGATCAGGGG TTCCAAACTGTATTAGTTACTGCTACTATGACCAAGGCAGTACAAAAGCTGATAGATGAG GAATTTGAAGGTATTGTTCATTTACGGACAACAACCTTTCAAAAAAGAGTTGCAACTGCA CGGCATGACTTCATCAAACTGTCTGGTTCAGAAAACAAACTAGAGGCTCTTCTGCAGGTT CTTGAGCCAAGTTTAGCAAAGGGAAATAAAGTTATGGTGTTCTGCAATACTTTGAATTCA AGTCGTGCCGTGGACCATTTTCTGACTGAAAATCAGATATCTACTGTAAACTACCATGGG GAAGTTCCTGCTGAAGAGAGGGTTGAGAACCTGAACAAGTTCCGGAATGAAGAAGGGGAT TGCCCAACACTGGTCTGCACTGACCTAGCAGCTCGAGGCCTAGACTTGGATGTTGACCAT GTCATCATGTTTGACTTCCCATCAAACTCTATTGATTACCTCCATAGAACTGGAAGAACA GCACGCATGGGAGCCAAAGGGAAAGTTACAAGCCTTGTTGCGAAGAAAGATGTGACTTTA GCAACACGGATAGAAGAGGCTATGAAGAAAAACGAGAGCTTAGAGGCACTGACGACTAAT AACGTCAGAAGGGCGGCCGTCAACCCACAGTACACTAGTACCAAAGGACGACCAAGCGCT CTAAAGGTAGTAAACCAGAAGGGTAGAAGGGGAGTTGCACTGCAGACCAAGTCATCAAGG ATTGTCAAGGACACAACTTCATCCAGAAGGCGCTCGCCAATTAGGAGTCAACCAAGGTCG AAATCGACATCTTCAGGAAAAGCAAAACCAGTGCGATCTGCTAAGCCGAGCAAGAGTAGC AGCCCTAGCCCCAAGGTTGCAAAGAGCCGACCGAGACCAGAGGGTCGGAAAGGGGATGCT CTGAACAAGCTGGGTAGTAAGCTCAGTGTGGTTGGATTCAGAGGCCGCAGCTCAGGGAAA TCGGCACAAGCATCATAG

Peptide Sequence

PEP ID	Os01t0184500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:4485764:4490158:-1 gene:Os01g0184500 transcript:Os01t0184500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 39 description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0184500-01)
Sequence	MAMAGAAGRCLMLTRPSPLLRLRLLRAALATTTTTTTAAGASAVTAPTEPETTAREAPSR HELLLERLRQRHLKGVPAATPRPAQREKGRGGGGGGAQELQQKRRVEVVDSFEELGLGEE VMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLG MSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDM VVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQG FQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSENKLEALLQV LEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGD CPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKKDVTL ATRIEEAMKKNESLEALTTNNVRRAAVNPQYTSTKGRPSALKVVNQKGRRGVALQTKSSR IVKDTTSSRRRSPIRSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRPRPEGRKGDA LNKLGSKLSVVGFRGRSSGKSAQAS

Transcript Sequence

Transcript ID	Os01t0184500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:4485764:4490158:-1 gene:Os01g0184500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 39 description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0184500-01)
Sequence	ACCCCATTCCTCCTCCCCATCACAAAACCCGCCACCTCTAAACCCTCGCCCTCCTCCTCC CATGGCGATGGCCGGCGCCGCCGGGCGGTGCCTCATGCTGACCCGCCCGTCCCCTCTCCT CCGCCTCCGCCTCCTCCGCGCCGCGCTCGCTACCACCACGACCACCACCACGGCGGCGGG GGCATCCGCCGTCACCGCGCCGACCGAGCCCGAGACCACGGCGAGGGAGGCCCCGTCCCG CCACGAGCTCCTCCTCGAGCGCCTCCGGCAGCGCCACCTCAAGGGCGTGCCCGCTGCTAC CCCGAGGCCGGCGCAGCGGGAGAAGGGGAGGGGCGGCGGCGGCGGTGGCGCGCAGGAGCT GCAGCAGAAGAGGAGGGTCGAGGTGGTGGATAGTTTCGAGGAGCTCGGGCTCGGGGAGGA GGTGATGGCCGCGCTCGGGGAGATGGGTATCTCCAAGCCCACCGAGATCCAGTGCGTTGG TGTGCCCGCCGTGCTGGCTGGCACCAGTGTTGTGCTTGGCTCGCACACCGGTTCCGGGAA GACGCTCGCCTACCTGCTCCCGCTTGTTCAGCTACTGCGTCGTGATGAAGCAATGTTGGG AATGTCAATGAAACCAAGGAGGCCAAGAGCAGTAGTTCTCTGCCCCACAAGGGAGCTGAC TGAGCAGGTCTTCCGTGTCGCAAAGTCCATAAGCCATCACGCACGTTTTCGGTCAACAAT GGTTAGTGGAGGCAGCCGTATAAGGCCCCAGGAAGATTCTCTGAACATGCCTGTAGACAT GGTTGTTGGGACTCCTGGGAGGATTCTTGATCATATCAAGGATGGAAACATGGTTTATGG TGATATCAAGTATCTGGTCCTTGATGAGGCAGATACGATGTTTGATCAAGGTTTTGGACC AGACATTAGGAAGTTTCTTGCTCCTTTGAAGAATCGTGCTGCAAAACCTGGCGATCAGGG GTTCCAAACTGTATTAGTTACTGCTACTATGACCAAGGCAGTACAAAAGCTGATAGATGA GGAATTTGAAGGTATTGTTCATTTACGGACAACAACCTTTCAAAAAAGAGTTGCAACTGC ACGGCATGACTTCATCAAACTGTCTGGTTCAGAAAACAAACTAGAGGCTCTTCTGCAGGT TCTTGAGCCAAGTTTAGCAAAGGGAAATAAAGTTATGGTGTTCTGCAATACTTTGAATTC AAGTCGTGCCGTGGACCATTTTCTGACTGAAAATCAGATATCTACTGTAAACTACCATGG GGAAGTTCCTGCTGAAGAGAGGGTTGAGAACCTGAACAAGTTCCGGAATGAAGAAGGGGA TTGCCCAACACTGGTCTGCACTGACCTAGCAGCTCGAGGCCTAGACTTGGATGTTGACCA TGTCATCATGTTTGACTTCCCATCAAACTCTATTGATTACCTCCATAGAACTGGAAGAAC AGCACGCATGGGAGCCAAAGGGAAAGTTACAAGCCTTGTTGCGAAGAAAGATGTGACTTT AGCAACACGGATAGAAGAGGCTATGAAGAAAAACGAGAGCTTAGAGGCACTGACGACTAA TAACGTCAGAAGGGCGGCCGTCAACCCACAGTACACTAGTACCAAAGGACGACCAAGCGC TCTAAAGGTAGTAAACCAGAAGGGTAGAAGGGGAGTTGCACTGCAGACCAAGTCATCAAG GATTGTCAAGGACACAACTTCATCCAGAAGGCGCTCGCCAATTAGGAGTCAACCAAGGTC GAAATCGACATCTTCAGGAAAAGCAAAACCAGTGCGATCTGCTAAGCCGAGCAAGAGTAG CAGCCCTAGCCCCAAGGTTGCAAAGAGCCGACCGAGACCAGAGGGTCGGAAAGGGGATGC TCTGAACAAGCTGGGTAGTAAGCTCAGTGTGGTTGGATTCAGAGGCCGCAGCTCAGGGAA ATCGGCACAAGCATCATAGTGAGGCCTCGAGAATTTTGGGTAGTGAAATTCAACTTTTTG TAAATATCTGTGACTTGTTTCGGCCGTTTTCCCTGCAGGCTTGCAAGACCCTAATTGAGA CGCCCCTTCTAAAAGAAAACGTAGAACACTGAAATCTTACCACAGTACGTACATCTATCT GTTTACATTGTTGAACAATAATATCATCTGTTTCACTGTCCATGAAT